Variant report

Variant	rs10019730
Chromosome Location	chr4:30759504-30759505
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10030137	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13353549	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1447370	0.83[AMR][1000 genomes]
rs16884029	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16884052	1.00[EUR][1000 genomes]
rs16884054	1.00[EUR][1000 genomes]
rs16884077	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16884127	0.83[AMR][1000 genomes]
rs16884144	0.83[AMR][1000 genomes]
rs16884156	0.83[AMR][1000 genomes]
rs28604938	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28608891	0.84[AFR][1000 genomes]
rs28715457	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41530644	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213179	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213199	0.83[AMR][1000 genomes]
rs73213201	0.83[AMR][1000 genomes]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30737400-30770800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:30739400-30765000	Weak transcription	Fetal Lung	lung
3	chr4:30746400-30761800	Weak transcription	Left Ventricle	heart
4	chr4:30746400-30767000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:30748800-30761000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr4:30754600-30760400	Enhancers	HMEC	breast
7	chr4:30754800-30760000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr4:30756600-30760400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:30757200-30765400	Weak transcription	Fetal Stomach	stomach
10	chr4:30757400-30760200	Weak transcription	Spleen	Spleen
11	chr4:30757400-30761400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr4:30757400-30765200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr4:30757800-30760000	Enhancers	Hela-S3	cervix
14	chr4:30758000-30760200	Enhancers	NH-A	brain
15	chr4:30758200-30759800	Enhancers	Fetal Heart	heart
16	chr4:30758200-30760000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr4:30758400-30759600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr4:30758400-30759600	Enhancers	HSMM	muscle
19	chr4:30758400-30759800	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr4:30758400-30759800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr4:30758400-30760000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr4:30758400-30760400	Enhancers	NHLF	lung
23	chr4:30758600-30759600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr4:30758600-30759800	Enhancers	Placenta Amnion	Placenta Amnion
25	chr4:30758600-30760000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr4:30758800-30759600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr4:30758800-30759800	Enhancers	Osteobl	bone
28	chr4:30759000-30760200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr4:30759000-30760400	Enhancers	NHEK	skin
30	chr4:30759000-30762000	Weak transcription	Stomach Smooth Muscle	stomach
31	chr4:30759000-30762400	Weak transcription	Aorta	Aorta
32	chr4:30759000-30765400	Weak transcription	Colon Smooth Muscle	Colon
33	chr4:30759200-30759600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr4:30759200-30759600	Flanking Active TSS	HUVEC	blood vessel
35	chr4:30759200-30760400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr4:30759200-30770800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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