Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10019730	0.83[AMR][1000 genomes]
rs10030137	0.83[AMR][1000 genomes]
rs13353549	1.00[AMR][1000 genomes]
rs1447370	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16884029	1.00[AMR][1000 genomes]
rs16884077	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16884127	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16884144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28604938	1.00[AMR][1000 genomes]
rs28608891	0.83[AMR][1000 genomes]
rs28715457	1.00[AMR][1000 genomes]
rs41530644	1.00[AMR][1000 genomes]
rs73213179	1.00[AMR][1000 genomes]
rs73213194	0.87[EUR][1000 genomes]
rs73213196	0.87[EUR][1000 genomes]
rs73213199	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213201	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73214905	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73214907	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73214910	0.87[EUR][1000 genomes]
rs73214913	1.00[EUR][1000 genomes]
rs73214914	0.87[EUR][1000 genomes]
rs73214915	1.00[EUR][1000 genomes]
rs73214920	1.00[EUR][1000 genomes]
rs73214924	1.00[EUR][1000 genomes]
rs73214926	0.87[EUR][1000 genomes]
rs73214940	0.87[EUR][1000 genomes]
rs73214941	1.00[EUR][1000 genomes]
rs73214946	0.87[EUR][1000 genomes]
rs73214956	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4285	chr4:30815642-30838784	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30813800-30835800	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:30825200-30835800	Weak transcription	Aorta	Aorta
3	chr4:30830200-30838400	Weak transcription	Fetal Stomach	stomach
4	chr4:30830600-30837800	Weak transcription	NH-A	brain
5	chr4:30830800-30838400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:30833400-30842800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr4:30834600-30836800	Weak transcription	Right Ventricle	heart
8	chr4:30834600-30838000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr4:30834800-30838600	Enhancers	Fetal Heart	heart
10	chr4:30835000-30836600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr4:30835000-30837000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr4:30835200-30837000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr4:30835200-30838400	Weak transcription	Left Ventricle	heart
14	chr4:30835200-30842800	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr4:30835400-30838400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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