Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs13353549	0.83[AMR][1000 genomes]
rs1447370	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16884029	0.83[AMR][1000 genomes]
rs16884077	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16884127	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16884144	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16884156	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28604938	0.83[AMR][1000 genomes]
rs28715457	0.83[AMR][1000 genomes]
rs41530644	0.83[AMR][1000 genomes]
rs73213179	0.83[AMR][1000 genomes]
rs73213194	0.87[EUR][1000 genomes]
rs73213196	0.87[EUR][1000 genomes]
rs73213199	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213201	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73214907	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73214910	0.87[EUR][1000 genomes]
rs73214913	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73214914	0.87[EUR][1000 genomes]
rs73214915	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73214920	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73214924	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73214926	0.87[EUR][1000 genomes]
rs73214940	0.87[EUR][1000 genomes]
rs73214941	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73214946	0.87[EUR][1000 genomes]
rs73214956	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30842000-30854400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:30842400-30855200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr4:30842600-30854600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr4:30842600-30855800	Weak transcription	Aorta	Aorta
5	chr4:30846600-30855000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr4:30846800-30854600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:30849200-30854600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr4:30849200-30872200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:30850800-30855800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:30851000-30854000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:30851000-30854600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr4:30851000-30855800	Weak transcription	Colon Smooth Muscle	Colon
13	chr4:30851000-30857800	Weak transcription	Rectal Smooth Muscle	rectum
14	chr4:30851200-30851800	Weak transcription	Fetal Heart	heart
15	chr4:30851200-30854000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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