Variant report
| Variant | rs73214940 |
|---|---|
| Chromosome Location | chr4:30910125-30910126 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs1447370 | 0.87[EUR][1000 genomes] |
| rs16884077 | 0.87[EUR][1000 genomes] |
| rs16884127 | 0.87[EUR][1000 genomes] |
| rs16884144 | 0.87[EUR][1000 genomes] |
| rs16884156 | 0.87[EUR][1000 genomes] |
| rs73213194 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73213196 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73213199 | 0.87[EUR][1000 genomes] |
| rs73213201 | 0.87[EUR][1000 genomes] |
| rs73214905 | 0.87[EUR][1000 genomes] |
| rs73214907 | 0.87[EUR][1000 genomes] |
| rs73214910 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73214913 | 0.87[EUR][1000 genomes] |
| rs73214914 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73214915 | 0.87[EUR][1000 genomes] |
| rs73214920 | 0.87[EUR][1000 genomes] |
| rs73214924 | 0.87[EUR][1000 genomes] |
| rs73214926 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73214941 | 0.87[EUR][1000 genomes] |
| rs73214946 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73214956 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73216794 | 1.00[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs73218825 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv878810 | chr4:30823157-30987395 | Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv998450 | chr4:30823631-31628179 | Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:30907000-30913800 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
