Variant report

Variant	rs28604938
Chromosome Location	chr4:30751496-30751497
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10019730	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10030137	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13353549	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1447370	1.00[AMR][1000 genomes]
rs16884029	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16884052	1.00[EUR][1000 genomes]
rs16884054	1.00[EUR][1000 genomes]
rs16884077	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16884127	1.00[AMR][1000 genomes]
rs16884144	1.00[AMR][1000 genomes]
rs16884156	1.00[AMR][1000 genomes]
rs28608891	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28715457	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41530644	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213179	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213199	1.00[AMR][1000 genomes]
rs73213201	1.00[AMR][1000 genomes]
rs73214905	0.83[AMR][1000 genomes]
rs73214907	0.83[AMR][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30726200-30757400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:30730200-30754800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:30737400-30770800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr4:30739400-30765000	Weak transcription	Fetal Lung	lung
5	chr4:30739800-30752000	Weak transcription	Aorta	Aorta
6	chr4:30746400-30761800	Weak transcription	Left Ventricle	heart
7	chr4:30746400-30767000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr4:30746600-30754800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr4:30746800-30754600	Weak transcription	Colon Smooth Muscle	Colon
10	chr4:30747400-30753600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr4:30747400-30755000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr4:30748200-30754800	Weak transcription	NHLF	lung
13	chr4:30748400-30754600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr4:30748800-30761000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr4:30750000-30754400	Weak transcription	Fetal Heart	heart
16	chr4:30750400-30754800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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