Variant report
| Variant | rs16884484 |
|---|---|
| Chromosome Location | chr8:114289267-114289268 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10095641 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap] |
| rs10104356 | 0.84[MKK][hapmap] |
| rs10107745 | 1.00[AMR][1000 genomes] |
| rs10109289 | 1.00[AMR][1000 genomes] |
| rs10216929 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1610262 | 1.00[ASW][hapmap];1.00[YRI][hapmap] |
| rs16884478 | 1.00[YRI][hapmap] |
| rs16884527 | 1.00[YRI][hapmap] |
| rs16884552 | 1.00[YRI][hapmap] |
| rs16884610 | 1.00[ASW][hapmap] |
| rs16884620 | 1.00[ASW][hapmap] |
| rs16884622 | 1.00[ASW][hapmap] |
| rs16884683 | 1.00[AMR][1000 genomes] |
| rs16892652 | 1.00[AMR][1000 genomes] |
| rs28407790 | 1.00[AMR][1000 genomes] |
| rs6989956 | 0.84[MKK][hapmap];1.00[AMR][1000 genomes] |
| rs6990249 | 1.00[AMR][1000 genomes] |
| rs7003003 | 1.00[AMR][1000 genomes] |
| rs7820746 | 0.84[MKK][hapmap] |
| rs9297490 | 1.00[YRI][hapmap] |
| rs9297491 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2754581 | chr8:114029421-114419106 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv831428 | chr8:114102983-114320802 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv916637 | chr8:114116303-114338450 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv1022803 | chr8:114180224-114354093 | Enhancers Active TSS Weak transcription Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv1027156 | chr8:114246358-114290079 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
