Variant report
| Variant | rs16884764 |
|---|---|
| Chromosome Location | chr8:36138407-36138408 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No data |
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| Variant related genes | Relation type |
|---|---|
| ENSG00000253504 | TF binding region |
| ENSG00000253685 | TF binding region |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1107567 | 0.81[AFR][1000 genomes] |
| rs1107568 | 0.81[AFR][1000 genomes] |
| rs16884807 | 0.86[YRI][hapmap];0.91[AFR][1000 genomes] |
| rs6468359 | 0.98[AFR][1000 genomes] |
| rs6984135 | 1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6987238 | 1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7015213 | 0.98[AFR][1000 genomes] |
| rs73586362 | 0.99[AFR][1000 genomes] |
| rs73586363 | 0.99[AFR][1000 genomes] |
| rs73586369 | 0.99[AFR][1000 genomes] |
| rs73592006 | 0.98[AFR][1000 genomes] |
| rs73592008 | 0.98[AFR][1000 genomes] |
| rs73592010 | 0.98[AFR][1000 genomes] |
| rs73592012 | 0.98[AFR][1000 genomes] |
| rs73592014 | 0.98[AFR][1000 genomes] |
| rs73592019 | 0.98[AFR][1000 genomes] |
| rs73592021 | 0.98[AFR][1000 genomes] |
| rs73592024 | 0.98[AFR][1000 genomes] |
| rs73592026 | 0.98[AFR][1000 genomes] |
| rs7819939 | 0.81[AFR][1000 genomes] |
| rs7837634 | 0.91[AFR][1000 genomes] |
| rs879318 | 0.81[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533420 | chr8:35358115-36227536 | Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv1024552 | chr8:35655964-36210907 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 3 | nsv539548 | chr8:35655964-36210907 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 4 | nsv890718 | chr8:35948467-36224134 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
