Variant report
| Variant | rs6984135 |
|---|---|
| Chromosome Location | chr8:36137997-36137998 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | RFX5 | chr8:36137938-36138096 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 2 | FOS | chr8:36137788-36138025 | MCF10A-Er-Src | breast: | n/a | chr8:36137928-36137936 chr8:36137928-36137935 chr8:36137929-36137940 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000253504 | TF binding region |
| ENSG00000253685 | TF binding region |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs1107567 | 0.82[AFR][1000 genomes] |
| rs1107568 | 0.82[AFR][1000 genomes] |
| rs16884764 | 1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16884807 | 0.86[YRI][hapmap];0.92[AFR][1000 genomes] |
| rs16884809 | 0.84[YRI][hapmap] |
| rs16884856 | 0.84[YRI][hapmap] |
| rs6468359 | 0.99[AFR][1000 genomes] |
| rs6987238 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7015213 | 0.99[AFR][1000 genomes] |
| rs73586355 | 0.80[AFR][1000 genomes] |
| rs73586362 | 1.00[AFR][1000 genomes] |
| rs73586363 | 1.00[AFR][1000 genomes] |
| rs73586366 | 0.80[AFR][1000 genomes] |
| rs73586369 | 1.00[AFR][1000 genomes] |
| rs73592006 | 0.99[AFR][1000 genomes] |
| rs73592008 | 0.99[AFR][1000 genomes] |
| rs73592010 | 0.99[AFR][1000 genomes] |
| rs73592012 | 0.99[AFR][1000 genomes] |
| rs73592014 | 0.99[AFR][1000 genomes] |
| rs73592019 | 0.99[AFR][1000 genomes] |
| rs73592021 | 0.99[AFR][1000 genomes] |
| rs73592024 | 0.99[AFR][1000 genomes] |
| rs73592026 | 0.99[AFR][1000 genomes] |
| rs7819939 | 0.82[AFR][1000 genomes] |
| rs7837634 | 0.92[AFR][1000 genomes] |
| rs879316 | 0.84[YRI][hapmap] |
| rs879318 | 0.82[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533420 | chr8:35358115-36227536 | Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv1024552 | chr8:35655964-36210907 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 3 | nsv539548 | chr8:35655964-36210907 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 4 | nsv890718 | chr8:35948467-36224134 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
