Variant report
| Variant | rs73586355 |
|---|---|
| Chromosome Location | chr8:36137822-36137823 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | FOS | chr8:36137788-36138025 | MCF10A-Er-Src | breast: | n/a | chr8:36137928-36137936 chr8:36137928-36137935 chr8:36137929-36137940 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000253504 | TF binding region |
| ENSG00000253685 | TF binding region |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1107566 | 0.80[AFR][1000 genomes] |
| rs1107567 | 0.82[AFR][1000 genomes] |
| rs1107568 | 0.82[AFR][1000 genomes] |
| rs16884876 | 0.80[AFR][1000 genomes] |
| rs16884883 | 0.80[AFR][1000 genomes] |
| rs16884894 | 0.80[AFR][1000 genomes] |
| rs41408344 | 0.80[AFR][1000 genomes] |
| rs6983120 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6984135 | 0.80[AFR][1000 genomes] |
| rs6987238 | 0.80[AFR][1000 genomes] |
| rs73578572 | 0.80[AFR][1000 genomes] |
| rs73586362 | 0.80[AFR][1000 genomes] |
| rs73586363 | 0.80[AFR][1000 genomes] |
| rs73586366 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs73586369 | 0.80[AFR][1000 genomes] |
| rs73592013 | 0.87[AFR][1000 genomes] |
| rs7819939 | 0.82[AFR][1000 genomes] |
| rs7831591 | 0.80[AFR][1000 genomes] |
| rs7834732 | 0.80[AFR][1000 genomes] |
| rs7835665 | 0.80[AFR][1000 genomes] |
| rs879317 | 0.81[AFR][1000 genomes] |
| rs879318 | 0.82[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533420 | chr8:35358115-36227536 | Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv1024552 | chr8:35655964-36210907 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 3 | nsv539548 | chr8:35655964-36210907 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 4 | nsv890718 | chr8:35948467-36224134 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
