Variant report
Variant | rs73586366 |
---|---|
Chromosome Location | chr8:36139235-36139236 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:10)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:10 , 50 per page) page:
1
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | BACH1 | chr8:36139222-36139571 | K562 | blood: | n/a | n/a |
2 | MAFF | chr8:36139223-36139582 | K562 | blood: | n/a | chr8:36139401-36139419 |
3 | MAFK | chr8:36139226-36139588 | HepG2 | liver: | n/a | chr8:36139402-36139417 |
4 | MAFK | chr8:36139218-36139591 | HepG2 | liver: | n/a | chr8:36139402-36139417 |
5 | MAFK | chr8:36139087-36139657 | GM12878 | blood: | n/a | chr8:36139402-36139417 |
6 | MAFF | chr8:36139220-36139593 | HepG2 | liver: | n/a | chr8:36139401-36139419 |
7 | MAFK | chr8:36139223-36139591 | K562 | blood: | n/a | chr8:36139402-36139417 |
8 | BACH1 | chr8:36139227-36139586 | H1-hESC | embryonic stem cell: | n/a | n/a |
9 | MAFK | chr8:36138934-36139629 | H1-hESC | embryonic stem cell: | n/a | chr8:36139402-36139417 |
10 | MAFK | chr8:36139220-36139595 | IMR90 | lung: | n/a | chr8:36139402-36139417 |
No data |
No data |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000253504 | TF binding region |
ENSG00000253685 | TF binding region |
rs_ID | r2[population] |
---|---|
rs1107566 | 0.80[AFR][1000 genomes];0.83[AMR][1000 genomes] |
rs1107567 | 0.82[AFR][1000 genomes];0.83[AMR][1000 genomes] |
rs1107568 | 0.82[AFR][1000 genomes];0.83[AMR][1000 genomes] |
rs16884807 | 0.83[AMR][1000 genomes] |
rs16884876 | 0.80[AFR][1000 genomes];0.83[AMR][1000 genomes] |
rs16884883 | 0.80[AFR][1000 genomes];0.83[AMR][1000 genomes] |
rs16884894 | 0.80[AFR][1000 genomes];0.83[AMR][1000 genomes] |
rs16884902 | 0.83[AMR][1000 genomes] |
rs41408344 | 0.80[AFR][1000 genomes];0.83[AMR][1000 genomes] |
rs6468359 | 0.83[AMR][1000 genomes] |
rs6983120 | 0.98[AFR][1000 genomes];0.83[AMR][1000 genomes] |
rs6984135 | 0.80[AFR][1000 genomes] |
rs6987238 | 0.80[AFR][1000 genomes] |
rs7015213 | 0.83[AMR][1000 genomes] |
rs73578572 | 0.80[AFR][1000 genomes];0.83[AMR][1000 genomes] |
rs73586355 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes] |
rs73586362 | 0.80[AFR][1000 genomes];0.83[AMR][1000 genomes] |
rs73586363 | 0.80[AFR][1000 genomes];0.83[AMR][1000 genomes] |
rs73586369 | 0.80[AFR][1000 genomes];0.83[AMR][1000 genomes] |
rs73592006 | 0.83[AMR][1000 genomes] |
rs73592008 | 0.83[AMR][1000 genomes] |
rs73592010 | 0.83[AMR][1000 genomes] |
rs73592012 | 0.83[AMR][1000 genomes] |
rs73592013 | 0.87[AFR][1000 genomes];0.85[AMR][1000 genomes] |
rs73592014 | 0.83[AMR][1000 genomes] |
rs73592019 | 0.83[AMR][1000 genomes] |
rs73592021 | 0.83[AMR][1000 genomes] |
rs73592024 | 0.83[AMR][1000 genomes] |
rs73592026 | 0.83[AMR][1000 genomes] |
rs7819939 | 0.82[AFR][1000 genomes];0.83[AMR][1000 genomes] |
rs7831591 | 0.80[AFR][1000 genomes];0.83[AMR][1000 genomes] |
rs7834732 | 0.80[AFR][1000 genomes];0.83[AMR][1000 genomes] |
rs7835665 | 0.80[AFR][1000 genomes];0.83[AMR][1000 genomes] |
rs7837634 | 0.83[AMR][1000 genomes] |
rs879317 | 0.81[AFR][1000 genomes];0.85[AMR][1000 genomes] |
rs879318 | 0.82[AFR][1000 genomes];0.83[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv533420 | chr8:35358115-36227536 | Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
2 | nsv1024552 | chr8:35655964-36210907 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
3 | nsv539548 | chr8:35655964-36210907 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
4 | nsv890718 | chr8:35948467-36224134 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
No data |