Variant report

Variant	rs16885663
Chromosome Location	chr6:54510711-54510712
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12664791	1.00[CEU][hapmap]
rs1507108	1.00[CEU][hapmap]
rs16885880	1.00[CEU][hapmap]
rs17682328	1.00[CEU][hapmap]
rs2174144	1.00[CEU][hapmap]
rs62412297	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62412299	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62412324	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62414271	0.83[AMR][1000 genomes]
rs7757553	1.00[CEU][hapmap]
rs9464115	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9474936	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9885773	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026626	chr6:54506752-54531961	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54507000-54511800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:54509600-54510800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:54509600-54512400	Enhancers	Colon Smooth Muscle	Colon
4	chr6:54510200-54511000	Enhancers	Osteobl	bone
5	chr6:54510400-54511400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:54510400-54511600	Weak transcription	Aorta	Aorta
7	chr6:54510400-54512200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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