Variant report

Variant	rs16887831
Chromosome Location	chr5:57405800-57405801
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13185082	0.85[AFR][1000 genomes]
rs16887813	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16887817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16887826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16887834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73085737	1.00[AMR][1000 genomes]
rs73085739	1.00[AMR][1000 genomes]
rs73085744	1.00[AMR][1000 genomes]
rs73085760	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73085765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73085770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033051	chr5:57380218-57471801	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57403800-57409400	Weak transcription	HMEC	breast
2	chr5:57404000-57409400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:57404600-57410600	Weak transcription	Fetal Muscle Leg	muscle
4	chr5:57405400-57406000	Active TSS	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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