Variant report

Variant	rs73085737
Chromosome Location	chr5:57388003-57388004
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16887813	1.00[AMR][1000 genomes]
rs16887817	1.00[AMR][1000 genomes]
rs16887826	1.00[AMR][1000 genomes]
rs16887831	1.00[AMR][1000 genomes]
rs16887834	1.00[AMR][1000 genomes]
rs73085739	1.00[AMR][1000 genomes]
rs73085744	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73085760	1.00[AMR][1000 genomes]
rs73085765	1.00[AMR][1000 genomes]
rs73085770	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033051	chr5:57380218-57471801	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57384200-57389400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr5:57385200-57389400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr5:57385400-57389000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr5:57385400-57389000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr5:57385800-57389400	Weak transcription	A549	lung
6	chr5:57388000-57390600	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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