Variant report

Variant	rs73085760
Chromosome Location	chr5:57403544-57403545
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16887813	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16887817	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16887826	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16887831	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16887834	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73085737	1.00[AMR][1000 genomes]
rs73085739	1.00[AMR][1000 genomes]
rs73085744	1.00[AMR][1000 genomes]
rs73085765	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73085770	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033051	chr5:57380218-57471801	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57402400-57403800	Enhancers	NHDF-Ad	bronchial
2	chr5:57402800-57403800	Enhancers	Fetal Muscle Leg	muscle
3	chr5:57403200-57403800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:57403200-57404000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:57403200-57404200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr5:57403400-57403800	Enhancers	HMEC	breast
7	chr5:57403400-57404000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr5:57403400-57404000	Enhancers	HSMMtube	muscle
9	chr5:57403400-57404200	Enhancers	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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