Variant report

Variant	rs16888204
Chromosome Location	chr7:86370234-86370235
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10224033	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10226672	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10245069	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[TSI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10259486	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10952891	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11772755	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17161024	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2057833	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2190299	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs55776729	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57384334	1.00[ASN][1000 genomes]
rs6465086	1.00[ASN][1000 genomes]
rs6465087	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6465089	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6947778	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6954573	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6955452	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6955565	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6955917	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6957842	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6958245	1.00[ASN][1000 genomes]
rs6958716	1.00[ASN][1000 genomes]
rs6960053	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6967992	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6974073	1.00[ASN][1000 genomes]
rs6974507	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6977048	1.00[ASN][1000 genomes]
rs6978155	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs73382326	1.00[ASN][1000 genomes]
rs73382367	1.00[ASN][1000 genomes]
rs73398484	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7781922	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7800616	1.00[ASN][1000 genomes]
rs7801589	1.00[ASN][1000 genomes]
rs7802129	0.87[EUR][1000 genomes]
rs7804469	1.00[ASN][1000 genomes]
rs7812155	1.00[ASN][1000 genomes]
rs9655947	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025032	chr7:86032479-86642973	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831053	chr7:86268171-86440999	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1025277	chr7:86299224-87206007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
4	nsv538999	chr7:86299224-87206007	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
5	nsv532147	chr7:86299225-87121975	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86363000-86376000	Weak transcription	Brain Angular Gyrus	brain
2	chr7:86367400-86376000	Weak transcription	Brain Anterior Caudate	brain
3	chr7:86367400-86376200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr7:86367600-86373800	Weak transcription	Brain Substantia Nigra	brain
5	chr7:86367800-86378200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr7:86370200-86371200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr7:86370200-86371400	Enhancers	Primary hematopoietic stem cells	blood
8	chr7:86370200-86371600	Enhancers	Primary hematopoietic stem cells short term culture	blood

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