Variant report

Variant	rs55776729
Chromosome Location	chr7:86393339-86393340
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:86392827..86396172-chr7:86398112..86400759,3	K562	blood:
2	chr7:86392585..86394731-chr7:86405816..86407670,2	K562	blood:
3	chr7:86390201..86391910-chr7:86393306..86395003,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10224033	1.00[ASN][1000 genomes]
rs10226672	1.00[ASN][1000 genomes]
rs10245069	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10259486	1.00[ASN][1000 genomes]
rs10952891	1.00[ASN][1000 genomes]
rs11772755	1.00[ASN][1000 genomes]
rs16888204	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17161024	1.00[ASN][1000 genomes]
rs2057833	0.87[EUR][1000 genomes]
rs2190299	1.00[ASN][1000 genomes]
rs57384334	1.00[ASN][1000 genomes]
rs6465086	1.00[ASN][1000 genomes]
rs6465087	1.00[ASN][1000 genomes]
rs6465089	1.00[ASN][1000 genomes]
rs6947778	1.00[ASN][1000 genomes]
rs6954573	1.00[ASN][1000 genomes]
rs6955452	1.00[ASN][1000 genomes]
rs6955565	1.00[ASN][1000 genomes]
rs6955917	1.00[ASN][1000 genomes]
rs6957842	1.00[ASN][1000 genomes]
rs6958245	1.00[ASN][1000 genomes]
rs6958716	1.00[ASN][1000 genomes]
rs6960053	1.00[ASN][1000 genomes]
rs6967992	1.00[ASN][1000 genomes]
rs6974073	1.00[ASN][1000 genomes]
rs6974507	1.00[ASN][1000 genomes]
rs6977048	1.00[ASN][1000 genomes]
rs6978155	1.00[ASN][1000 genomes]
rs73382326	1.00[ASN][1000 genomes]
rs73382367	1.00[ASN][1000 genomes]
rs73398484	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7781922	1.00[ASN][1000 genomes]
rs7800616	1.00[ASN][1000 genomes]
rs7801589	1.00[ASN][1000 genomes]
rs7802129	0.87[EUR][1000 genomes]
rs7804469	1.00[ASN][1000 genomes]
rs7812155	1.00[ASN][1000 genomes]
rs9655947	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025032	chr7:86032479-86642973	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831053	chr7:86268171-86440999	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1025277	chr7:86299224-87206007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
4	nsv538999	chr7:86299224-87206007	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
5	nsv532147	chr7:86299225-87121975	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86379600-86400200	Weak transcription	Fetal Brain Female	brain
2	chr7:86389200-86394000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:86389200-86394000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:86390000-86393400	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr7:86390400-86398000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:86390600-86397600	Weak transcription	Brain Angular Gyrus	brain
7	chr7:86390600-86398000	Weak transcription	Brain Anterior Caudate	brain
8	chr7:86390600-86398200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr7:86390800-86394600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:86390800-86397800	Weak transcription	Brain Hippocampus Middle	brain
11	chr7:86392400-86393400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr7:86392600-86393400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr7:86392600-86393400	Enhancers	Brain Substantia Nigra	brain
14	chr7:86392600-86394800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr7:86392800-86405400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr7:86393000-86398000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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