Variant report

Variant	rs6978155
Chromosome Location	chr7:86477894-86477895
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:86469915..86472204-chr7:86476498..86478177,2	MCF-7	breast:
2	chr7:86470428..86472995-chr7:86477137..86479165,2	K562	blood:
3	chr7:86472639..86474528-chr7:86475845..86478446,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10224033	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10226672	1.00[CHB][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10245069	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10259486	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10952891	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11772755	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16888204	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17161024	1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17161223	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1999945	0.85[CEU][hapmap]
rs1999946	0.87[CEU][hapmap]
rs1999947	0.85[CEU][hapmap]
rs2190299	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs55776729	1.00[ASN][1000 genomes]
rs57384334	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6465086	1.00[ASN][1000 genomes]
rs6465087	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6465089	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6947778	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6950123	1.00[ASN][1000 genomes]
rs6954573	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6955452	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6955565	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6955917	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6957842	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6958245	1.00[ASN][1000 genomes]
rs6958716	1.00[ASN][1000 genomes]
rs6960053	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6967992	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6974073	1.00[ASN][1000 genomes]
rs6974507	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6977048	1.00[ASN][1000 genomes]
rs73382326	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73382367	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73398484	1.00[ASN][1000 genomes]
rs7781922	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7800616	1.00[ASN][1000 genomes]
rs7801050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7801589	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7804469	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7812155	1.00[ASN][1000 genomes]
rs9655947	1.00[CHB][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025032	chr7:86032479-86642973	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1025277	chr7:86299224-87206007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv538999	chr7:86299224-87206007	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
4	nsv532147	chr7:86299225-87121975	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86443400-86480600	Weak transcription	Brain Angular Gyrus	brain
2	chr7:86460800-86492800	Weak transcription	Brain Germinal Matrix	brain
3	chr7:86461000-86495400	Weak transcription	Brain Hippocampus Middle	brain
4	chr7:86465600-86496800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:86466000-86486600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:86467000-86497400	Weak transcription	Fetal Brain Female	brain
7	chr7:86467400-86479600	Weak transcription	Brain Anterior Caudate	brain
8	chr7:86468000-86479600	Weak transcription	Brain Substantia Nigra	brain
9	chr7:86469000-86480800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr7:86469200-86479600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr7:86469200-86496800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr7:86474800-86478200	Enhancers	Fetal Intestine Small	intestine
13	chr7:86475200-86478200	Enhancers	Fetal Intestine Large	intestine
14	chr7:86475200-86478200	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr7:86475800-86496600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr7:86476400-86478600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr7:86476800-86479600	Weak transcription	Pancreas	Pancrea
18	chr7:86477000-86478000	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr7:86477200-86479600	Weak transcription	HepG2	liver

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