Variant report

Variant	rs7801050
Chromosome Location	chr7:86634828-86634829
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:86634706..86636422-chr7:86779641..86782221,2	K562	blood:
2	chr7:86630026..86631634-chr7:86634549..86636254,2	K562	blood:
3	chr7:86628975..86632166-chr7:86632193..86637013,6	K562	blood:
4	chr7:86632845..86635664-chr7:86636851..86638390,2	K562	blood:

Variant related genes	Relation type
ENSG00000135164	Chromatin interaction
ENSG00000224046	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10224033	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10226672	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10259486	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10952891	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11772755	1.00[ASN][1000 genomes]
rs17161024	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17161118	0.82[YRI][hapmap]
rs17161223	1.00[CHB][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1999945	0.85[CEU][hapmap];0.82[YRI][hapmap]
rs1999946	0.87[CEU][hapmap];0.82[YRI][hapmap]
rs1999947	0.85[CEU][hapmap];0.82[YRI][hapmap]
rs2190299	1.00[ASN][1000 genomes]
rs57384334	1.00[ASN][1000 genomes]
rs6465086	1.00[ASN][1000 genomes]
rs6465087	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6465089	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6947778	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6950123	1.00[ASN][1000 genomes]
rs6954573	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6955452	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6955565	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6955917	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6957842	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6958245	1.00[ASN][1000 genomes]
rs6958716	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6960053	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6967992	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6974073	1.00[ASN][1000 genomes]
rs6974507	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6977048	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6978155	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs73382326	1.00[ASN][1000 genomes]
rs73382367	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7781922	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7800616	1.00[ASN][1000 genomes]
rs7801589	1.00[ASN][1000 genomes]
rs7804469	1.00[ASN][1000 genomes]
rs7812155	1.00[ASN][1000 genomes]
rs9655947	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025032	chr7:86032479-86642973	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1025277	chr7:86299224-87206007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv538999	chr7:86299224-87206007	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
4	nsv532147	chr7:86299225-87121975	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	nsv1015870	chr7:86490491-86802320	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
6	nsv539000	chr7:86490491-86802320	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
7	nsv527889	chr7:86496042-86832603	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86633200-86635000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:86633200-86635000	Enhancers	Fetal Heart	heart
3	chr7:86634000-86635000	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr7:86634400-86635200	Enhancers	Brain Substantia Nigra	brain
5	chr7:86634400-86635600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:86634800-86636000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr7:86634800-86636000	Weak transcription	K562	blood
8	chr7:86634800-86639400	Weak transcription	Brain Anterior Caudate	brain
9	chr7:86634800-86639600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr7:86634800-86642000	Weak transcription	Brain Hippocampus Middle	brain

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