Variant report

Variant	rs17161118
Chromosome Location	chr7:86586561-86586562
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:86578487..86581845-chr7:86586370..86588762,3	K562	blood:
2	chr7:86585953..86589148-chr7:86622119..86624378,3	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10215436	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10236047	1.00[CEU][hapmap]
rs10236910	1.00[CEU][hapmap]
rs10258008	1.00[CEU][hapmap]
rs10263372	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10267763	1.00[CEU][hapmap]
rs10269943	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10271867	0.88[CEU][hapmap]
rs1029367	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11974622	1.00[CEU][hapmap]
rs11976876	1.00[CEU][hapmap]
rs11979332	1.00[CEU][hapmap]
rs11981220	1.00[CEU][hapmap]
rs12111888	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1476455	1.00[CEU][hapmap]
rs1557665	1.00[CEU][hapmap]
rs17161067	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17161096	1.00[CEU][hapmap]
rs17161098	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17697878	1.00[CEU][hapmap]
rs17697894	1.00[CEU][hapmap]
rs17765493	1.00[CEU][hapmap]
rs1999945	1.00[CHB][hapmap];0.91[YRI][hapmap];0.83[EUR][1000 genomes]
rs1999946	1.00[CHB][hapmap];0.91[YRI][hapmap]
rs1999947	1.00[CHB][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2299231	1.00[CEU][hapmap]
rs2373361	1.00[CEU][hapmap]
rs28362761	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28405414	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28410495	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28479466	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28639719	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28755802	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35895874	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60438843	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60623709	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61699848	0.83[EUR][1000 genomes]
rs6958716	0.84[AFR][1000 genomes]
rs6965029	1.00[CEU][hapmap]
rs6972489	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6977048	0.84[AFR][1000 genomes]
rs73382349	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73382401	0.92[AFR][1000 genomes]
rs73384105	0.90[AFR][1000 genomes]
rs73384108	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73384109	0.86[AMR][1000 genomes]
rs73384111	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73384112	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73384113	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73384121	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7781782	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7783745	1.00[CEU][hapmap]
rs7792069	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7801050	0.82[YRI][hapmap]
rs7808623	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs7810135	1.00[CEU][hapmap]
rs9640574	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025032	chr7:86032479-86642973	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1025277	chr7:86299224-87206007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv538999	chr7:86299224-87206007	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
4	nsv532147	chr7:86299225-87121975	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	nsv1015870	chr7:86490491-86802320	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
6	nsv539000	chr7:86490491-86802320	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
7	nsv527889	chr7:86496042-86832603	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86579200-86594400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:86579400-86592800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:86579600-86588600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:86580200-86592800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr7:86580200-86596000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:86583800-86588000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:86585000-86586600	Enhancers	K562	blood
8	chr7:86585400-86586600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr7:86585400-86586600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr7:86585400-86587000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr7:86585600-86586600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr7:86585600-86586600	Enhancers	Brain Cingulate Gyrus	brain
13	chr7:86585600-86586600	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr7:86585600-86586800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr7:86585800-86586600	Enhancers	H9 Cell Line	embryonic stem cell
16	chr7:86585800-86586600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:86586000-86586600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr7:86586000-86588600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr7:86586200-86586600	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr7:86586200-86587400	Weak transcription	GM12878-XiMat	blood
21	chr7:86586200-86587600	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr7:86586200-86590800	Weak transcription	Brain Hippocampus Middle	brain
23	chr7:86586400-86588400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr7:86586400-86588600	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr7:86586400-86588600	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr7:86586400-86590600	Weak transcription	Brain Substantia Nigra	brain
27	chr7:86586400-86591800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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