Variant report

Variant	rs17161098
Chromosome Location	chr7:86531065-86531066
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10215436	0.97[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10236047	1.00[CEU][hapmap]
rs10236910	1.00[CEU][hapmap]
rs10258008	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10263372	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10267763	1.00[CEU][hapmap]
rs10269943	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10271867	0.88[CEU][hapmap]
rs1029367	0.98[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11974622	1.00[CEU][hapmap]
rs11976876	1.00[CEU][hapmap]
rs11979332	1.00[CEU][hapmap]
rs11981220	1.00[CEU][hapmap]
rs12111888	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12113681	0.97[AFR][1000 genomes]
rs1476455	1.00[CEU][hapmap]
rs1557665	1.00[CEU][hapmap]
rs17161067	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17161096	1.00[CEU][hapmap]
rs17161118	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17697878	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs17697894	1.00[CEU][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes]
rs17765493	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs1999945	1.00[CHB][hapmap]
rs1999946	1.00[CHB][hapmap]
rs1999947	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2299231	1.00[CEU][hapmap]
rs2373361	1.00[CEU][hapmap]
rs28362761	0.93[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28405414	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28410495	0.98[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28479466	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28490267	0.98[AFR][1000 genomes]
rs28635668	0.89[AFR][1000 genomes]
rs28639719	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28755802	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35895874	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60438843	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60623709	1.00[ASN][1000 genomes]
rs61082072	0.97[AFR][1000 genomes]
rs6465089	0.93[YRI][hapmap];0.92[AFR][1000 genomes]
rs6965029	1.00[CEU][hapmap]
rs6972489	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73382349	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73382367	0.95[AFR][1000 genomes]
rs73382375	1.00[AFR][1000 genomes]
rs73382388	0.98[AFR][1000 genomes]
rs73384121	1.00[ASN][1000 genomes]
rs7781782	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7783745	1.00[CEU][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes]
rs7792069	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7808623	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes]
rs7810135	1.00[CEU][hapmap]
rs9640574	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025032	chr7:86032479-86642973	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1025277	chr7:86299224-87206007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv538999	chr7:86299224-87206007	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
4	nsv532147	chr7:86299225-87121975	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	nsv1015870	chr7:86490491-86802320	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
6	nsv539000	chr7:86490491-86802320	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
7	nsv527889	chr7:86496042-86832603	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86495200-86542000	Weak transcription	Brain Substantia Nigra	brain
2	chr7:86495800-86550000	Weak transcription	Lung	lung
3	chr7:86498400-86576200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:86507000-86553200	Weak transcription	Pancreas	Pancrea
5	chr7:86507400-86561400	Weak transcription	Aorta	Aorta
6	chr7:86508000-86551200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:86508000-86560800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr7:86508000-86566800	Weak transcription	Brain Anterior Caudate	brain
9	chr7:86508800-86542200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr7:86510800-86543800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr7:86512600-86545000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr7:86516000-86556400	Weak transcription	Fetal Stomach	stomach
13	chr7:86517000-86541000	Weak transcription	HUVEC	blood vessel
14	chr7:86517200-86532800	Weak transcription	Right Ventricle	heart
15	chr7:86518000-86568800	Weak transcription	Psoas Muscle	Psoas
16	chr7:86518000-86577000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr7:86518600-86542800	Weak transcription	K562	blood
18	chr7:86521000-86576400	Weak transcription	Hela-S3	cervix
19	chr7:86522200-86540800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr7:86522200-86540800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr7:86522400-86542800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr7:86524400-86538200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr7:86526000-86533200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr7:86527000-86577000	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr7:86527200-86536200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr7:86527200-86536600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr7:86527200-86540800	Weak transcription	Brain Cingulate Gyrus	brain
28	chr7:86527200-86542000	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr7:86527200-86575800	Weak transcription	Left Ventricle	heart
30	chr7:86527400-86540800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr7:86527600-86540800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr7:86528400-86535200	Weak transcription	Adipose Nuclei	Adipose
33	chr7:86529200-86533000	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr7:86529600-86531200	Strong transcription	HUES64 Cell Line	embryonic stem cell
35	chr7:86530400-86531200	Strong transcription	Brain Angular Gyrus	brain
36	chr7:86530400-86534400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr7:86530400-86568400	Weak transcription	Brain Hippocampus Middle	brain
38	chr7:86530600-86531200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
39	chr7:86530600-86540800	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr7:86530800-86531600	Strong transcription	HUES48 Cell Line	embryonic stem cell

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