Variant report

Variant	rs9640574
Chromosome Location	chr7:86556458-86556459
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:86540771..86562582-chr7:86776173..86789890,50	K562	blood:
2	chr7:86556043..86556599-chr7:86866396..86867246,2	MCF-7	breast:
3	chr7:86554981..86557760-chr7:86561507..86564445,2	MCF-7	breast:
4	chr7:86556099..86556663-chr7:86865982..86866551,2	MCF-7	breast:
5	chr7:86553928..86558459-chr7:86779633..86782031,4	MCF-7	breast:
6	chr7:86543968..86544797-chr7:86555701..86556625,3	K562	blood:
7	chr7:86555804..86556575-chr7:86777404..86778295,4	K562	blood:
8	chr7:86555365..86557020-chr7:86764559..86766701,2	K562	blood:
9	chr7:86555575..86556607-chr7:86777323..86778397,7	MCF-7	breast:
10	chr7:86547506..86550161-chr7:86552240..86556965,4	K562	blood:
11	chr7:86548433..86550044-chr7:86554057..86556965,2	K562	blood:
12	chr7:86556386..86558219-chr7:86560176..86562829,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000224046	Chromatin interaction
ENSG00000135164	Chromatin interaction
ENSG00000164659	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1014634	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10232633	0.88[EUR][1000 genomes]
rs10236047	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10236910	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10257473	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10258008	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10263372	1.00[CEU][hapmap]
rs10267763	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10271867	0.88[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11974622	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11976876	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11979332	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11981220	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12111888	1.00[CEU][hapmap]
rs12113681	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12704299	0.91[CHB][hapmap]
rs1476455	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1557665	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17161067	1.00[CEU][hapmap]
rs17161070	0.89[EUR][1000 genomes]
rs17161096	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17161098	1.00[CEU][hapmap]
rs17161118	1.00[CEU][hapmap]
rs17697806	0.95[ASN][1000 genomes]
rs17697878	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17697894	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17765493	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2299231	1.00[CEU][hapmap];0.82[CHB][hapmap];0.88[EUR][1000 genomes]
rs2373361	1.00[CEU][hapmap];0.92[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28490267	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28583791	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28635668	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61082072	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6965029	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6965383	0.84[CHB][hapmap]
rs6972489	1.00[CEU][hapmap]
rs73382375	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73382388	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73382401	0.90[EUR][1000 genomes]
rs73384105	0.90[EUR][1000 genomes]
rs7781178	0.91[CHB][hapmap]
rs7781414	0.83[CHB][hapmap]
rs7781782	1.00[CEU][hapmap]
rs7783745	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7807203	0.84[CHB][hapmap]
rs7808623	1.00[CEU][hapmap]
rs7810135	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025032	chr7:86032479-86642973	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1025277	chr7:86299224-87206007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv538999	chr7:86299224-87206007	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
4	nsv532147	chr7:86299225-87121975	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	nsv1015870	chr7:86490491-86802320	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
6	nsv539000	chr7:86490491-86802320	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
7	nsv527889	chr7:86496042-86832603	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
8	esv1802698	chr7:86539563-86560268	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86498400-86576200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:86507400-86561400	Weak transcription	Aorta	Aorta
3	chr7:86508000-86560800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr7:86508000-86566800	Weak transcription	Brain Anterior Caudate	brain
5	chr7:86518000-86568800	Weak transcription	Psoas Muscle	Psoas
6	chr7:86518000-86577000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:86521000-86576400	Weak transcription	Hela-S3	cervix
8	chr7:86527000-86577000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr7:86527200-86575800	Weak transcription	Left Ventricle	heart
10	chr7:86530400-86568400	Weak transcription	Brain Hippocampus Middle	brain
11	chr7:86531200-86568800	Weak transcription	Brain Angular Gyrus	brain
12	chr7:86539200-86578800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr7:86539600-86568000	Weak transcription	Fetal Brain Male	brain
14	chr7:86540800-86567400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:86541600-86568800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr7:86543200-86568800	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr7:86543400-86571400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr7:86543600-86560800	Weak transcription	HUVEC	blood vessel
19	chr7:86543600-86566600	Weak transcription	Adipose Nuclei	Adipose
20	chr7:86551000-86576200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr7:86553400-86560600	Weak transcription	Pancreas	Pancrea
22	chr7:86554800-86557600	Weak transcription	GM12878-XiMat	blood
23	chr7:86554800-86568800	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr7:86555000-86558800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr7:86555000-86566600	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr7:86555000-86577000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr7:86555400-86560800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr7:86555600-86561200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr7:86556000-86558200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr7:86556000-86558800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr7:86556000-86560400	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr7:86556000-86560400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr7:86556000-86560600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr7:86556000-86565800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr7:86556200-86558600	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr7:86556200-86560400	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr7:86556400-86558600	Weak transcription	K562	blood
38	chr7:86556400-86562600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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