Variant report

Variant	rs17161070
Chromosome Location	chr7:86494674-86494675
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:86494378..86496895-chr7:86524387..86526363,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1014634	0.89[EUR][1000 genomes]
rs10232633	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10236047	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs10236910	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[EUR][1000 genomes]
rs10257473	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10258008	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs10263372	1.00[CEU][hapmap];0.84[TSI][hapmap]
rs10267763	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs10269943	0.81[EUR][1000 genomes]
rs10271867	0.88[CEU][hapmap];0.88[CHB][hapmap];0.94[GIH][hapmap];0.82[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs11974622	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[GIH][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs11976876	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs11979332	1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap];0.88[EUR][1000 genomes]
rs11981220	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[EUR][1000 genomes]
rs12111888	1.00[CEU][hapmap]
rs12113681	0.89[EUR][1000 genomes]
rs12704299	0.90[CHB][hapmap]
rs1476455	1.00[CEU][hapmap];0.90[CHB][hapmap];0.84[EUR][1000 genomes]
rs1557665	1.00[CEU][hapmap];0.94[GIH][hapmap];0.92[TSI][hapmap];0.88[EUR][1000 genomes]
rs17161067	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17161096	1.00[CEU][hapmap];0.82[CHB][hapmap];0.94[EUR][1000 genomes]
rs17161098	1.00[CEU][hapmap]
rs17161118	1.00[CEU][hapmap]
rs17697878	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs17697894	1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap];0.88[EUR][1000 genomes]
rs17765493	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2237567	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2299231	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2373361	1.00[CEU][hapmap];0.94[GIH][hapmap];0.89[EUR][1000 genomes]
rs28479466	0.81[EUR][1000 genomes]
rs28490267	0.89[EUR][1000 genomes]
rs28583791	0.88[EUR][1000 genomes]
rs28635668	0.88[EUR][1000 genomes]
rs28755802	0.81[EUR][1000 genomes]
rs60438843	0.81[EUR][1000 genomes]
rs61082072	0.92[EUR][1000 genomes]
rs6965029	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];0.85[MKK][hapmap];0.92[TSI][hapmap];0.89[EUR][1000 genomes]
rs6965383	0.82[CHB][hapmap]
rs6972489	1.00[CEU][hapmap]
rs73382349	0.81[EUR][1000 genomes]
rs73382375	0.94[EUR][1000 genomes]
rs73382388	0.89[EUR][1000 genomes]
rs7781178	0.90[CHB][hapmap]
rs7781414	1.00[CHB][hapmap]
rs7781782	1.00[CEU][hapmap];0.84[TSI][hapmap]
rs7783745	1.00[CEU][hapmap];0.82[CHB][hapmap];0.89[EUR][1000 genomes]
rs7792069	0.81[EUR][1000 genomes]
rs7807203	0.82[CHB][hapmap]
rs7808623	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7810135	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];0.85[MKK][hapmap];0.92[TSI][hapmap];0.89[EUR][1000 genomes]
rs9640574	1.00[CEU][hapmap];0.82[CHB][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025032	chr7:86032479-86642973	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1025277	chr7:86299224-87206007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv538999	chr7:86299224-87206007	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
4	nsv532147	chr7:86299225-87121975	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	nsv1015870	chr7:86490491-86802320	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
6	nsv539000	chr7:86490491-86802320	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86461000-86495400	Weak transcription	Brain Hippocampus Middle	brain
2	chr7:86465600-86496800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:86467000-86497400	Weak transcription	Fetal Brain Female	brain
4	chr7:86469200-86496800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr7:86475800-86496600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr7:86481200-86495000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr7:86481200-86498000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:86481400-86494800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr7:86481400-86525800	Weak transcription	Brain Angular Gyrus	brain
10	chr7:86488400-86495000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr7:86493400-86494800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr7:86493800-86497000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr7:86494200-86495000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:86494200-86496000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:86494400-86495800	ZNF genes & repeats	Brain Anterior Caudate	brain
16	chr7:86494600-86495200	Strong transcription	Brain Substantia Nigra	brain

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