Variant report

Variant	rs28362761
Chromosome Location	chr7:86583044-86583045
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:86581703..86583282-chr7:86848670..86850285,2	MCF-7	breast:
2	chr7:86570162..86571702-chr7:86582796..86584341,2	K562	blood:
3	chr7:86570202..86573182-chr7:86582610..86584341,2	K562	blood:
4	chr7:86581994..86583701-chr7:86822777..86825606,2	K562	blood:

Variant related genes	Relation type
ENSG00000135185	Chromatin interaction
ENSG00000135164	Chromatin interaction
ENSG00000164659	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10215436	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10258008	0.93[AFR][1000 genomes]
rs10263372	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10269943	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1029367	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12111888	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12113681	0.97[AFR][1000 genomes]
rs17161067	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17161098	0.93[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17161118	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17697878	0.92[AFR][1000 genomes]
rs17697894	0.95[AFR][1000 genomes]
rs17765493	0.89[AFR][1000 genomes]
rs1999947	1.00[ASN][1000 genomes]
rs28405414	0.93[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28410495	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28479466	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28490267	0.95[AFR][1000 genomes]
rs28635668	0.95[AFR][1000 genomes]
rs28639719	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28755802	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35895874	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60438843	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60623709	1.00[ASN][1000 genomes]
rs61082072	0.90[AFR][1000 genomes]
rs6465089	0.95[AFR][1000 genomes]
rs6972489	0.93[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73382349	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73382367	0.92[AFR][1000 genomes]
rs73382375	0.93[AFR][1000 genomes]
rs73382388	0.95[AFR][1000 genomes]
rs73384121	1.00[ASN][1000 genomes]
rs7781782	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7783745	0.95[AFR][1000 genomes]
rs7792069	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7808623	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025032	chr7:86032479-86642973	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1025277	chr7:86299224-87206007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv538999	chr7:86299224-87206007	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
4	nsv532147	chr7:86299225-87121975	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	nsv1015870	chr7:86490491-86802320	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
6	nsv539000	chr7:86490491-86802320	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
7	nsv527889	chr7:86496042-86832603	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86578000-86585600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr7:86579000-86585400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr7:86579200-86585600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:86579200-86585800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:86579200-86594400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:86579400-86592800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr7:86579600-86588600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:86580200-86592800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr7:86580200-86596000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr7:86580400-86583200	Weak transcription	GM12878-XiMat	blood
11	chr7:86580600-86585600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr7:86582400-86583800	Enhancers	Brain Hippocampus Middle	brain
13	chr7:86582600-86583200	Enhancers	Brain Anterior Caudate	brain
14	chr7:86582600-86583400	Enhancers	Brain Angular Gyrus	brain
15	chr7:86582600-86583600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr7:86582600-86583600	Enhancers	HepG2	liver
17	chr7:86582600-86584800	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr7:86582600-86585200	Enhancers	Brain Cingulate Gyrus	brain
19	chr7:86583000-86583200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr7:86583000-86583800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr7:86583000-86584200	Weak transcription	Brain Substantia Nigra	brain

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