Variant report

Variant	rs17161223
Chromosome Location	chr7:86651289-86651290
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10224033	1.00[ASN][1000 genomes]
rs10226672	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10259486	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10952891	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11772755	1.00[ASN][1000 genomes]
rs17161024	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2190299	1.00[ASN][1000 genomes]
rs57384334	1.00[ASN][1000 genomes]
rs6465086	1.00[ASN][1000 genomes]
rs6465087	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6465089	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6947778	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6950123	1.00[ASN][1000 genomes]
rs6954573	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6955452	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6955565	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6955917	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6957842	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6958245	1.00[ASN][1000 genomes]
rs6958716	1.00[ASN][1000 genomes]
rs6960053	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6967992	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6974073	1.00[ASN][1000 genomes]
rs6974507	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6977048	1.00[ASN][1000 genomes]
rs6978155	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs73382326	1.00[ASN][1000 genomes]
rs73382367	1.00[ASN][1000 genomes]
rs7781922	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7800616	1.00[ASN][1000 genomes]
rs7801050	1.00[CHB][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7801589	1.00[ASN][1000 genomes]
rs7804469	1.00[ASN][1000 genomes]
rs7812155	1.00[ASN][1000 genomes]
rs9655947	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025277	chr7:86299224-87206007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv538999	chr7:86299224-87206007	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv532147	chr7:86299225-87121975	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv1015870	chr7:86490491-86802320	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
5	nsv539000	chr7:86490491-86802320	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
6	nsv527889	chr7:86496042-86832603	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86644200-86658400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:86650400-86651400	Enhancers	Hela-S3	cervix
3	chr7:86650800-86654200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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