Variant report

Variant	rs16888467
Chromosome Location	chr6:57166902-57166903
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17654409	0.82[CEU][hapmap];0.82[JPT][hapmap]
rs17704753	0.82[CEU][hapmap];0.82[JPT][hapmap]
rs6919145	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6923392	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9475827	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9475828	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9475829	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9475830	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv934026	chr6:56382056-57184218	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv533050	chr6:56504480-57297586	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:57163800-57168800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:57164000-57167400	Weak transcription	Fetal Kidney	kidney
3	chr6:57164200-57171600	Enhancers	Rectal Smooth Muscle	rectum
4	chr6:57164400-57167200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:57165400-57169400	Weak transcription	Fetal Muscle Leg	muscle
6	chr6:57166200-57167000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:57166200-57167000	Enhancers	Fetal Stomach	stomach
8	chr6:57166400-57167000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:57166400-57167000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:57166400-57167600	Enhancers	Fetal Lung	lung
11	chr6:57166400-57168200	Enhancers	Colon Smooth Muscle	Colon
12	chr6:57166400-57168800	Enhancers	Stomach Smooth Muscle	stomach
13	chr6:57166600-57168400	Weak transcription	Ovary	ovary
14	chr6:57166800-57167000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr6:57166800-57167200	Enhancers	Duodenum Smooth Muscle	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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