Variant report

Variant	rs9475830
Chromosome Location	chr6:57175584-57175585
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16888467	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17704753	0.85[AMR][1000 genomes]
rs6919145	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6923392	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9475827	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9475828	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9475829	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9475848	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934026	chr6:56382056-57184218	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv533050	chr6:56504480-57297586	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:57170400-57178200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr6:57171000-57175600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:57171200-57177200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:57171200-57178000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:57171400-57177000	Weak transcription	HSMM	muscle
6	chr6:57171400-57177600	Weak transcription	Colon Smooth Muscle	Colon
7	chr6:57171400-57178000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr6:57171600-57177200	Weak transcription	NH-A	brain
9	chr6:57171600-57178200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:57172600-57177600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:57173200-57177400	Weak transcription	NHLF	lung
12	chr6:57173400-57177200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:57173600-57177400	Weak transcription	Osteobl	bone
14	chr6:57175200-57175600	Enhancers	Muscle Satellite Cultured Cells	--
15	chr6:57175200-57175800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:57175200-57177600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:57175400-57175600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:57175400-57175800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:57175400-57175800	Enhancers	NHDF-Ad	bronchial
20	chr6:57175400-57176200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:57175400-57176800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
22	chr6:57175400-57177200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:57175400-57177400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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