Variant report

Variant	rs9475828
Chromosome Location	chr6:57170821-57170822
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:57151577..57154543-chr6:57168750..57171657,2	MCF-7	breast:
2	chr6:57166262..57168451-chr6:57170162..57172445,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16888467	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6919145	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6923392	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9475827	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9475829	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9475830	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv934026	chr6:56382056-57184218	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv533050	chr6:56504480-57297586	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:57164200-57171600	Enhancers	Rectal Smooth Muscle	rectum
2	chr6:57168200-57171600	Enhancers	Fetal Stomach	stomach
3	chr6:57168400-57171800	Enhancers	NHLF	lung
4	chr6:57168600-57171400	Enhancers	Colon Smooth Muscle	Colon
5	chr6:57168600-57171400	Enhancers	HSMM	muscle
6	chr6:57168600-57171800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:57168800-57171000	Enhancers	Osteobl	bone
8	chr6:57168800-57171200	Enhancers	HSMMtube	muscle
9	chr6:57169400-57171600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:57170200-57171000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:57170200-57171000	Weak transcription	Ovary	ovary
12	chr6:57170200-57171600	Enhancers	Fetal Muscle Leg	muscle
13	chr6:57170400-57171400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:57170400-57171800	Enhancers	Muscle Satellite Cultured Cells	--
15	chr6:57170400-57173400	Enhancers	NHDF-Ad	bronchial
16	chr6:57170400-57178200	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr6:57170600-57171000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr6:57170600-57171000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:57170600-57171200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:57170600-57171400	Enhancers	Stomach Smooth Muscle	stomach
21	chr6:57170600-57171800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:57170600-57171800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr6:57170800-57171400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr6:57170800-57172400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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