Variant report

Variant	rs16888809
Chromosome Location	chr6:78082515-78082516
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1342632	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1738516	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1738518	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1738519	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1738523	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1777795	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1777796	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1777797	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1777800	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1777803	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1777804	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1777805	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1777806	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1777807	0.93[ASN][1000 genomes]
rs1777808	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1777812	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1777813	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2211407	0.81[ASN][1000 genomes]
rs2211409	0.81[ASN][1000 genomes]
rs2211412	0.84[ASN][1000 genomes]
rs2226149	0.81[ASN][1000 genomes]
rs2320295	0.81[ASN][1000 genomes]
rs2320298	0.85[ASN][1000 genomes]
rs2746590	0.83[ASN][1000 genomes]
rs2746591	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2746592	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2746593	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2746594	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2798523	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2798525	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2798526	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35405235	0.80[ASN][1000 genomes]
rs4499895	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4708328	0.88[ASN][1000 genomes]
rs4708329	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4708330	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58535979	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs58816934	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59227895	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60136329	0.86[ASN][1000 genomes]
rs61003419	0.84[ASN][1000 genomes]
rs6453970	0.81[ASN][1000 genomes]
rs9352465	0.82[ASN][1000 genomes]
rs9443399	0.82[ASN][1000 genomes]
rs9448071	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017082	chr6:77585310-78258237	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv534282	chr6:77764575-78351994	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1034979	chr6:77781244-78426249	Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv538324	chr6:77781244-78426249	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1015307	chr6:77902559-78352291	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1028259	chr6:78059491-78709871	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv538325	chr6:78059491-78709871	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:78079000-78083400	Weak transcription	Gastric	stomach
2	chr6:78082200-78083600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:78082400-78083200	Weak transcription	Duodenum Mucosa	Duodenum

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