Variant report

Variant	rs4708329
Chromosome Location	chr6:78072990-78072991
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1342632	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16888809	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1738516	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1738518	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1738519	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1738523	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1777795	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1777796	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1777797	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1777800	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1777803	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1777804	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1777805	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1777806	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1777807	0.86[ASN][1000 genomes]
rs1777808	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1777812	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1777813	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2211407	0.87[ASN][1000 genomes]
rs2211409	0.87[ASN][1000 genomes]
rs2211412	0.91[ASN][1000 genomes]
rs2226149	0.87[ASN][1000 genomes]
rs2320295	0.87[ASN][1000 genomes]
rs2746591	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2746592	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2746593	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2746594	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2798523	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2798525	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2798526	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35405235	0.86[ASN][1000 genomes]
rs4499895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4708328	0.94[ASN][1000 genomes]
rs4708330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58535979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58816934	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59227895	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60136329	0.93[ASN][1000 genomes]
rs61003419	0.91[ASN][1000 genomes]
rs6453970	0.87[ASN][1000 genomes]
rs9294070	0.85[ASN][1000 genomes]
rs9352465	0.89[ASN][1000 genomes]
rs9443399	0.89[ASN][1000 genomes]
rs9448071	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017082	chr6:77585310-78258237	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv534282	chr6:77764575-78351994	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1034979	chr6:77781244-78426249	Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv538324	chr6:77781244-78426249	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1015307	chr6:77902559-78352291	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1024795	chr6:78028751-78076926	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv1018131	chr6:78031037-78076926	Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv1028259	chr6:78059491-78709871	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv538325	chr6:78059491-78709871	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:78044200-78078200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:78069600-78076600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:78070200-78078200	Weak transcription	Left Ventricle	heart
4	chr6:78072200-78073800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:78072200-78077000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:78072400-78073000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:78072400-78073000	Weak transcription	NHEK	skin
8	chr6:78072400-78078200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:78072400-78078400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:78072600-78073000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr6:78072600-78073400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links