Variant report

Variant	rs2211412
Chromosome Location	chr6:78043075-78043076
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1342632	0.87[ASN][1000 genomes]
rs1361760	0.86[EUR][1000 genomes]
rs16888809	0.84[ASN][1000 genomes]
rs1970540	0.93[EUR][1000 genomes]
rs2211407	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2211409	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2226149	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2320295	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35405235	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4499895	0.91[ASN][1000 genomes]
rs4708328	0.88[ASN][1000 genomes]
rs4708329	0.91[ASN][1000 genomes]
rs4708330	0.91[ASN][1000 genomes]
rs58535979	0.91[ASN][1000 genomes]
rs58816934	0.91[ASN][1000 genomes]
rs60136329	0.98[ASN][1000 genomes]
rs61003419	0.95[ASN][1000 genomes]
rs6453970	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6921367	0.91[EUR][1000 genomes]
rs6932428	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9294070	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9343598	1.00[EUR][1000 genomes]
rs9352465	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9359260	0.95[EUR][1000 genomes]
rs9359261	0.97[EUR][1000 genomes]
rs9443399	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9448071	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017082	chr6:77585310-78258237	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv534282	chr6:77764575-78351994	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1034979	chr6:77781244-78426249	Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv538324	chr6:77781244-78426249	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2753543	chr6:77791848-78059351	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1015307	chr6:77902559-78352291	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1024795	chr6:78028751-78076926	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv1018131	chr6:78031037-78076926	Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv1015358	chr6:78033996-78066871	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:78042600-78044200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:78042600-78044200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:78042600-78044400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:78042600-78044400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:78042800-78044000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:78042800-78044000	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:78042800-78044200	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:78042800-78044400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:78043000-78043600	ZNF genes & repeats	Right Ventricle	heart
10	chr6:78043000-78043800	ZNF genes & repeats	Gastric	stomach
11	chr6:78043000-78044000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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