Variant report

Variant	rs16889092
Chromosome Location	chr6:24334379-24334380
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10946694	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs12192494	0.93[JPT][hapmap]
rs12192603	0.93[JPT][hapmap]
rs1923168	0.82[ASN][1000 genomes]
rs4599626	0.93[JPT][hapmap]
rs6904234	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7770684	0.83[CHB][hapmap];0.93[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33852	chr6:24331709-24334480	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24327400-24339200	Weak transcription	Pancreas	Pancrea
2	chr6:24330200-24338400	Weak transcription	Fetal Intestine Large	intestine
3	chr6:24332200-24334400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:24332400-24335200	Genic enhancers	HepG2	liver
5	chr6:24332600-24338600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:24333000-24334400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr6:24334200-24334800	Strong transcription	Fetal Kidney	kidney
8	chr6:24334200-24334800	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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