Variant report

Variant	rs7770684
Chromosome Location	chr6:24340212-24340213
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:24339917..24341948-chr6:24355684..24358710,3	MCF-7	breast:
2	chr6:24339050..24344227-chr6:24347020..24349931,5	MCF-7	breast:
3	chr6:24338936..24342390-chr6:24350898..24353843,3	MCF-7	breast:
4	chr6:24340134..24343269-chr6:24348514..24352207,3	MCF-7	breast:
5	chr6:24333030..24335051-chr6:24339193..24343115,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000146038	Chromatin interaction
ENSG00000146049	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12189743	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12192494	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12192603	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1923168	0.95[ASN][1000 genomes]
rs1923169	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2185597	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2328819	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4412188	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4445044	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4496795	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4541735	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4580860	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4599626	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6456605	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6456608	0.85[JPT][hapmap]
rs6904234	1.00[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs6940827	0.84[JPT][hapmap]
rs7751169	0.86[JPT][hapmap]
rs7754567	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7759923	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7775064	0.94[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7775357	0.86[JPT][hapmap]
rs793649	0.86[JPT][hapmap]
rs793650	0.85[JPT][hapmap]
rs793659	0.85[JPT][hapmap]
rs793698	0.85[JPT][hapmap]
rs793720	0.85[JPT][hapmap]
rs793721	0.84[JPT][hapmap]
rs793722	0.84[JPT][hapmap]
rs9460992	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9460994	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467117	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467121	0.85[JPT][hapmap]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24338200-24340400	Strong transcription	Fetal Kidney	kidney
2	chr6:24338400-24340400	ZNF genes & repeats	A549	lung
3	chr6:24339600-24355600	Weak transcription	Pancreas	Pancrea
4	chr6:24339800-24340600	Genic enhancers	HepG2	liver
5	chr6:24340200-24340600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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