Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:24339050..24344227-chr6:24347020..24349931,5	MCF-7	breast:
2	chr6:24338936..24342390-chr6:24350898..24353843,3	MCF-7	breast:
3	chr6:24333030..24335051-chr6:24339193..24343115,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10946694	0.86[JPT][hapmap]
rs12189743	0.95[ASN][1000 genomes]
rs12192494	1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs12192603	1.00[CHB][hapmap];0.96[CHD][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs16889092	0.82[ASN][1000 genomes]
rs1923169	0.95[ASN][1000 genomes]
rs2185597	0.95[ASN][1000 genomes]
rs2328819	0.95[ASN][1000 genomes]
rs4412188	0.95[ASN][1000 genomes]
rs4445044	0.95[ASN][1000 genomes]
rs4496795	0.95[ASN][1000 genomes]
rs4541735	0.95[ASN][1000 genomes]
rs4580860	0.95[ASN][1000 genomes]
rs4599626	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs6456605	0.95[ASN][1000 genomes]
rs6904234	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7754567	0.95[ASN][1000 genomes]
rs7759923	0.93[ASN][1000 genomes]
rs7770684	1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs7775064	0.95[ASN][1000 genomes]
rs9460992	0.85[ASN][1000 genomes]
rs9460994	0.95[ASN][1000 genomes]
rs9467117	0.95[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1923168	BTN2A3	cis	cerebellum	SCAN
rs1923168	NKAPL	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24334400-24339600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:24338200-24340400	Strong transcription	Fetal Kidney	kidney
3	chr6:24338400-24340400	ZNF genes & repeats	A549	lung
4	chr6:24339200-24339600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:24339200-24339600	Genic enhancers	Pancreas	Pancrea
6	chr6:24339200-24339800	Strong transcription	HepG2	liver

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