Variant report

Variant	rs793722
Chromosome Location	chr6:24352363-24352364
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:24348089..24349877-chr6:24350134..24353015,2	MCF-7	breast:
2	chr6:24338936..24342390-chr6:24350898..24353843,3	MCF-7	breast:
3	chr6:24346472..24348076-chr6:24351043..24353319,2	K562	blood:
4	chr6:24350075..24352665-chr6:24356780..24360162,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000146038	Chromatin interaction
ENSG00000146049	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10946694	0.83[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs12192603	0.85[JPT][hapmap]
rs12196464	0.87[ASN][1000 genomes]
rs12525718	0.81[ASN][1000 genomes]
rs12527102	0.87[ASN][1000 genomes]
rs1629620	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2025033	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2328820	0.83[ASN][1000 genomes]
rs4382236	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4599626	0.85[JPT][hapmap]
rs6456608	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6913986	0.87[ASN][1000 genomes]
rs6940827	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs714452	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7751169	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7758878	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7768604	0.84[ASN][1000 genomes]
rs7770684	0.84[JPT][hapmap]
rs7775357	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs793649	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs793650	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs793658	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs793659	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs793662	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs793663	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs793666	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs793694	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs793698	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs793699	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs793701	0.85[ASN][1000 genomes]
rs793703	0.86[ASN][1000 genomes]
rs793720	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs793721	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs811102	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs811103	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs811578	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs813227	0.94[YRI][hapmap]
rs9366569	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9467121	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467123	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9467124	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9467126	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9467129	0.85[ASN][1000 genomes]
rs9467134	0.90[ASN][1000 genomes]
rs9467135	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026638	chr6:24347972-24475300	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24339600-24355600	Weak transcription	Pancreas	Pancrea
2	chr6:24341200-24357600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:24345800-24356800	Weak transcription	Fetal Intestine Large	intestine
4	chr6:24346000-24354800	Weak transcription	A549	lung
5	chr6:24347000-24357000	Weak transcription	Fetal Intestine Small	intestine
6	chr6:24350200-24352800	Weak transcription	Fetal Kidney	kidney
7	chr6:24351600-24353000	Strong transcription	HepG2	liver

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