Variant report

Variant	rs9467135
Chromosome Location	chr6:24390470-24390471
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:24382936..24386801-chr6:24387584..24390590,3	K562	blood:
2	chr6:24388493..24391215-chr6:24394249..24397019,3	K562	blood:
3	chr6:24388493..24392053-chr6:24395083..24398329,4	K562	blood:
4	chr6:24384186..24386194-chr6:24388139..24390606,2	MCF-7	breast:
5	chr6:24282327..24284460-chr6:24388227..24391209,2	MCF-7	breast:
6	chr6:24282963..24283844-chr6:24390234..24391089,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10946694	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12196464	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12527102	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1629620	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2025033	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2328820	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28824273	0.82[ASN][1000 genomes]
rs4382236	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6456608	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6913986	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6940827	0.87[ASN][1000 genomes]
rs714452	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7751169	0.87[ASN][1000 genomes]
rs7758878	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7768604	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7775357	0.87[ASN][1000 genomes]
rs793649	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs793650	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs793658	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs793659	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs793660	0.81[EUR][1000 genomes]
rs793662	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs793663	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs793666	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs793676	0.81[EUR][1000 genomes]
rs793694	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs793698	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs793699	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs793701	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs793703	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs793720	0.87[ASN][1000 genomes]
rs793721	0.87[ASN][1000 genomes]
rs793722	0.87[ASN][1000 genomes]
rs811102	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs811103	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs811578	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9366569	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9467121	0.87[ASN][1000 genomes]
rs9467123	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9467124	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9467126	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9467129	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9467134	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026638	chr6:24347972-24475300	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24386400-24391200	Enhancers	HepG2	liver
2	chr6:24389800-24391600	Weak transcription	GM12878-XiMat	blood

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