Variant report
| Variant | rs28824273 |
|---|---|
| Chromosome Location | chr6:24371029-24371030 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:24360427..24362179-chr6:24370310..24373267,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10946694 | 0.90[ASN][1000 genomes] |
| rs12196464 | 0.90[ASN][1000 genomes] |
| rs12525718 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12527102 | 0.82[ASN][1000 genomes] |
| rs1629620 | 0.83[ASN][1000 genomes] |
| rs2025033 | 0.83[ASN][1000 genomes] |
| rs6456608 | 0.83[ASN][1000 genomes] |
| rs6913986 | 0.80[ASN][1000 genomes] |
| rs714452 | 0.83[ASN][1000 genomes] |
| rs7758878 | 0.81[ASN][1000 genomes] |
| rs7768604 | 0.87[ASN][1000 genomes] |
| rs793659 | 0.83[ASN][1000 genomes] |
| rs793662 | 0.83[ASN][1000 genomes] |
| rs793663 | 0.83[ASN][1000 genomes] |
| rs793666 | 0.83[ASN][1000 genomes] |
| rs793694 | 0.85[ASN][1000 genomes] |
| rs793698 | 0.82[ASN][1000 genomes] |
| rs793699 | 0.85[ASN][1000 genomes] |
| rs811102 | 0.81[ASN][1000 genomes] |
| rs811103 | 0.83[ASN][1000 genomes] |
| rs811578 | 0.85[ASN][1000 genomes] |
| rs9295623 | 0.92[ASN][1000 genomes] |
| rs9366569 | 0.84[ASN][1000 genomes] |
| rs9467123 | 0.81[ASN][1000 genomes] |
| rs9467124 | 0.81[ASN][1000 genomes] |
| rs9467126 | 0.85[ASN][1000 genomes] |
| rs9467129 | 0.88[ASN][1000 genomes] |
| rs9467134 | 0.83[ASN][1000 genomes] |
| rs9467135 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1026638 | chr6:24347972-24475300 | Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs28824273 | MRS2L | Cis_1M | lymphoblastoid | RTeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:24363400-24376200 | Weak transcription | HepG2 | liver |
