Variant report

Variant	rs6913986
Chromosome Location	chr6:24389516-24389517
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:24382936..24386801-chr6:24387584..24390590,3	K562	blood:
2	chr6:24282956..24283866-chr6:24389181..24390147,5	K562	blood:
3	chr6:24282939..24284070-chr6:24389118..24390156,6	MCF-7	breast:
4	chr6:24388493..24391215-chr6:24394249..24397019,3	K562	blood:
5	chr6:24388493..24392053-chr6:24395083..24398329,4	K562	blood:
6	chr6:24384186..24386194-chr6:24388139..24390606,2	MCF-7	breast:
7	chr6:24283208..24284031-chr6:24389181..24390289,7	MCF-7	breast:
8	chr6:24355437..24359973-chr6:24386139..24390174,5	MCF-7	breast:
9	chr6:24282327..24284460-chr6:24388227..24391209,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000146049	Chromatin interaction
ENSG00000146038	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10946694	0.90[ASN][1000 genomes]
rs12196464	0.90[ASN][1000 genomes]
rs12527102	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1629620	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2025033	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2328820	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28824273	0.80[ASN][1000 genomes]
rs4382236	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6456608	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6940827	0.87[ASN][1000 genomes]
rs714452	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7751169	0.87[ASN][1000 genomes]
rs7758878	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7768604	0.91[ASN][1000 genomes]
rs7775357	0.87[ASN][1000 genomes]
rs793649	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs793650	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs793658	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs793659	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs793662	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs793663	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs793666	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs793694	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs793698	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs793699	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs793701	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs793703	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs793720	0.87[ASN][1000 genomes]
rs793721	0.87[ASN][1000 genomes]
rs793722	0.87[ASN][1000 genomes]
rs811102	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs811103	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs811578	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9366569	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9467121	0.87[ASN][1000 genomes]
rs9467123	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9467124	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9467126	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9467129	0.92[ASN][1000 genomes]
rs9467134	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9467135	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026638	chr6:24347972-24475300	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24386400-24391200	Enhancers	HepG2	liver
2	chr6:24389200-24389800	Active TSS	A549	lung
3	chr6:24389200-24389800	Active TSS	Hela-S3	cervix

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