Variant report

Variant	rs12527102
Chromosome Location	chr6:24392154-24392155
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:24391794..24393739-chr6:24451484..24453982,2	K562	blood:
2	chr6:24390665..24393640-chr6:24400291..24404220,4	K562	blood:
3	chr6:24390665..24394346-chr6:24399840..24403711,4	K562	blood:

Variant related genes	Relation type
ENSG00000124532	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10946694	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12196464	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1629620	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2025033	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2328820	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28824273	0.82[ASN][1000 genomes]
rs4382236	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6456608	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6913986	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6940827	0.87[ASN][1000 genomes]
rs714452	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7751169	0.87[ASN][1000 genomes]
rs7758878	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7768604	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7775357	0.87[ASN][1000 genomes]
rs793649	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs793650	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs793651	0.81[EUR][1000 genomes]
rs793658	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs793659	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs793660	0.83[EUR][1000 genomes]
rs793662	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs793663	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs793666	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs793676	0.84[EUR][1000 genomes]
rs793694	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs793698	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs793699	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs793701	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs793703	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs793720	0.87[ASN][1000 genomes]
rs793721	0.87[ASN][1000 genomes]
rs793722	0.87[ASN][1000 genomes]
rs811102	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs811103	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs811578	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9366569	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9467121	0.87[ASN][1000 genomes]
rs9467123	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9467124	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9467126	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9467129	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9467134	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9467135	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026638	chr6:24347972-24475300	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24391600-24392600	Enhancers	GM12878-XiMat	blood
2	chr6:24391600-24392800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:24391800-24392200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:24392000-24392400	Enhancers	Dnd41	blood

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