Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:24390665..24393640-chr6:24400291..24404220,4	K562	blood:
2	chr6:24388493..24391215-chr6:24394249..24397019,3	K562	blood:
3	chr6:24388493..24392053-chr6:24395083..24398329,4	K562	blood:
4	chr6:24390665..24394346-chr6:24399840..24403711,4	K562	blood:
5	chr6:24282327..24284460-chr6:24388227..24391209,2	MCF-7	breast:
6	chr6:24282963..24283844-chr6:24390234..24391089,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000124532	Chromatin interaction

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10946694	0.82[CEU][hapmap]
rs12527102	0.84[EUR][1000 genomes]
rs1535331	1.00[LWK][hapmap]
rs1629620	0.82[EUR][1000 genomes]
rs2025033	0.85[EUR][1000 genomes]
rs2328820	0.82[EUR][1000 genomes]
rs3765502	1.00[LWK][hapmap]
rs4382236	0.81[EUR][1000 genomes]
rs6456608	0.83[EUR][1000 genomes]
rs714452	0.83[EUR][1000 genomes]
rs793649	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs793650	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs793651	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs793659	0.85[CEU][hapmap]
rs793662	0.82[EUR][1000 genomes]
rs793663	0.82[EUR][1000 genomes]
rs793694	0.83[EUR][1000 genomes]
rs793698	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs793699	0.84[EUR][1000 genomes]
rs793701	0.81[EUR][1000 genomes]
rs811102	0.84[EUR][1000 genomes]
rs811103	0.85[EUR][1000 genomes]
rs811578	0.83[EUR][1000 genomes]
rs9366569	0.82[EUR][1000 genomes]
rs9379655	1.00[LWK][hapmap]
rs9467123	0.80[EUR][1000 genomes]
rs9467126	0.81[EUR][1000 genomes]
rs9467134	0.86[EUR][1000 genomes]
rs9467135	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026638	chr6:24347972-24475300	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs793676	ZKSCAN4	cis	parietal	SCAN
rs793676	ZKSCAN4	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24386400-24391200	Enhancers	HepG2	liver
2	chr6:24389800-24391600	Weak transcription	GM12878-XiMat	blood

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