Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:24395571..24397261-chr6:24401614..24404339,2	K562	blood:
2	chr6:24388493..24391215-chr6:24394249..24397019,3	K562	blood:
3	chr6:24388493..24392053-chr6:24395083..24398329,4	K562	blood:

Variant related genes	Relation type
ENSG00000124532	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12527102	0.81[EUR][1000 genomes]
rs1629620	0.81[EUR][1000 genomes]
rs2025033	0.84[EUR][1000 genomes]
rs2328820	0.84[EUR][1000 genomes]
rs6456608	0.81[EUR][1000 genomes]
rs714452	0.82[EUR][1000 genomes]
rs793649	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs793650	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs793659	0.81[CEU][hapmap]
rs793662	0.81[EUR][1000 genomes]
rs793663	0.81[EUR][1000 genomes]
rs793676	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs793694	0.82[EUR][1000 genomes]
rs793698	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs793699	0.81[EUR][1000 genomes]
rs811102	0.81[EUR][1000 genomes]
rs811103	0.84[EUR][1000 genomes]
rs811578	0.82[EUR][1000 genomes]
rs9366569	0.81[EUR][1000 genomes]
rs9467123	0.81[EUR][1000 genomes]
rs9467134	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026638	chr6:24347972-24475300	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs793651	ZKSCAN4	cis	cerebellum	SCAN
rs793651	ZKSCAN4	cis	parietal	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24394400-24396000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:24394600-24396000	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr6:24394800-24396000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:24394800-24396000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:24394800-24396000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr6:24394800-24396000	Enhancers	HMEC	breast
7	chr6:24394800-24397200	Enhancers	Placenta	Placenta
8	chr6:24395000-24396000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:24395000-24396000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:24395000-24396000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:24395000-24396000	Enhancers	HSMMtube	muscle
12	chr6:24395000-24396000	Enhancers	NHDF-Ad	bronchial
13	chr6:24395000-24396000	Enhancers	Osteobl	bone
14	chr6:24395200-24398800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:24395600-24396000	Enhancers	Hela-S3	cervix
16	chr6:24395800-24396400	Enhancers	Skeletal Muscle Female	skeletal muscle

Quick Search: