Variant report

Variant	rs16889502
Chromosome Location	chr6:37160049-37160050
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:37159019..37162838-chr6:37167718..37170821,3	K562	blood:
2	chr6:37139864..37146803-chr6:37158990..37163193,11	K562	blood:
3	chr6:37158855..37161477-chr6:37165530..37167195,2	K562	blood:
4	chr6:37151400..37157351-chr6:37157640..37163417,11	K562	blood:
5	chr6:37156818..37161104-chr6:37172850..37175996,3	K562	blood:
6	chr6:37140835..37143675-chr6:37158995..37161367,4	K562	blood:
7	chr6:37149768..37151327-chr6:37159660..37161403,2	K562	blood:
8	chr6:36971710..36973758-chr6:37159189..37161224,2	K562	blood:
9	chr6:37159957..37163284-chr6:37166694..37170488,3	K562	blood:
10	chr6:36999933..37002459-chr6:37159726..37162067,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000146192	Chromatin interaction
ENSG00000252687	Chromatin interaction
ENSG00000137193	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10155767	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16889514	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2842625	0.82[JPT][hapmap]
rs4714041	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4714042	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4714043	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73415854	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs900002	0.82[JPT][hapmap]
rs9470528	1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9470530	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9470533	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9470534	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37141000-37165000	Weak transcription	Right Atrium	heart
2	chr6:37145600-37162800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:37147800-37160800	Enhancers	Primary hematopoietic stem cells	blood
4	chr6:37153800-37162800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr6:37154600-37160800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:37155400-37160200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr6:37155600-37162800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:37156400-37162400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr6:37156600-37160800	Enhancers	Dnd41	blood
10	chr6:37157200-37160800	Enhancers	Fetal Thymus	thymus
11	chr6:37157400-37161200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:37158200-37169800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr6:37158400-37161400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:37158800-37161600	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr6:37159400-37160200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr6:37159400-37160400	Enhancers	Primary T cells fromperipheralblood	blood
17	chr6:37159600-37160200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr6:37159600-37160200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:37159600-37160200	Enhancers	Fetal Intestine Small	intestine
20	chr6:37159600-37160600	Flanking Active TSS	K562	blood
21	chr6:37159600-37160800	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr6:37159600-37160800	Enhancers	Fetal Heart	heart
23	chr6:37159600-37161000	Enhancers	Primary T cells from cord blood	blood
24	chr6:37159600-37161000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr6:37159800-37160600	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr6:37159800-37162000	Enhancers	HepG2	liver
27	chr6:37160000-37160600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr6:37160000-37160800	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr6:37160000-37161200	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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