Variant report

Variant	rs900002
Chromosome Location	chr6:37161391-37161392
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:37159019..37162838-chr6:37167718..37170821,3	K562	blood:
2	chr6:37139864..37146803-chr6:37158990..37163193,11	K562	blood:
3	chr6:37158855..37161477-chr6:37165530..37167195,2	K562	blood:
4	chr6:37151400..37157351-chr6:37157640..37163417,11	K562	blood:
5	chr6:37149768..37151327-chr6:37159660..37161403,2	K562	blood:
6	chr6:37159957..37163284-chr6:37166694..37170488,3	K562	blood:
7	chr6:36999933..37002459-chr6:37159726..37162067,2	K562	blood:
8	chr6:37140365..37143420-chr6:37160123..37163963,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000137193	Chromatin interaction
ENSG00000252687	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10807180	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10947663	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11752000	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16889502	0.82[JPT][hapmap]
rs1757004	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1757007	0.81[EUR][1000 genomes]
rs1766696	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1766697	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1766698	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2265486	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2482013	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2482014	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2622887	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2622888	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2622889	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2776790	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2776791	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2776792	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2776794	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2788070	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2788071	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2788072	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2788073	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2788074	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2788075	0.89[CEU][hapmap];0.81[GIH][hapmap];0.88[TSI][hapmap];0.82[EUR][1000 genomes]
rs2842624	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2842625	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2842626	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2842627	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2842628	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2842629	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2842630	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2842631	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2842632	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2842633	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9349030	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368990	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9380651	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9394421	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9394422	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9394424	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9394425	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs900002	ITPR3	cis	cerebellum	SCAN
rs900002	FKBP5	cis	cerebellum	SCAN

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37141000-37165000	Weak transcription	Right Atrium	heart
2	chr6:37145600-37162800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:37153800-37162800	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr6:37155600-37162800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:37156400-37162400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:37158200-37169800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr6:37158400-37161400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr6:37158800-37161600	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr6:37159800-37162000	Enhancers	HepG2	liver
10	chr6:37160200-37162400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr6:37160400-37169000	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr6:37160600-37162400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr6:37160600-37162800	Enhancers	K562	blood
14	chr6:37160800-37161600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr6:37160800-37161600	Weak transcription	Fetal Thymus	thymus
16	chr6:37160800-37162200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:37160800-37162400	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr6:37160800-37162400	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr6:37160800-37162600	Weak transcription	Dnd41	blood
20	chr6:37160800-37167400	Weak transcription	Primary hematopoietic stem cells	blood
21	chr6:37161200-37161400	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr6:37161200-37161400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr6:37161200-37161600	Enhancers	Primary T cells from cord blood	blood
24	chr6:37161200-37161600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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