Variant report

Variant	rs2622889
Chromosome Location	chr6:37169505-37169506
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36993719..36995482-chr6:37168035..37170817,2	K562	blood:
2	chr6:37137974..37142365-chr6:37169170..37171597,4	K562	blood:
3	chr6:37159957..37163284-chr6:37166694..37170488,3	K562	blood:
4	chr6:37159019..37162838-chr6:37167718..37170821,3	K562	blood:

Variant related genes	Relation type
ENSG00000137193	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10807180	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10947663	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11752000	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1757004	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1757007	0.80[EUR][1000 genomes]
rs1766696	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1766697	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1766698	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2265486	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2482013	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2482014	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2622887	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2622888	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2776790	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2776791	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2776792	1.00[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2776794	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2788070	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2788071	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2788072	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2788073	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2788074	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2788075	0.89[CEU][hapmap];0.81[GIH][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes]
rs2842624	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2842625	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2842626	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2842627	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2842628	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2842629	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2842630	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2842631	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2842632	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2842633	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs900002	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9349030	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9368987	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9368990	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9380651	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9394421	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9394422	0.82[EUR][1000 genomes]
rs9394424	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9394425	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2622889	ITPR3	cis	cerebellum	SCAN
rs2622889	FKBP5	cis	cerebellum	SCAN

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37158200-37169800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr6:37162600-37169600	Weak transcription	Primary T cells from cord blood	blood
3	chr6:37162600-37169600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr6:37162800-37169600	Weak transcription	Dnd41	blood
5	chr6:37167200-37179200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr6:37167400-37173400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:37167600-37173600	Enhancers	Fetal Intestine Small	intestine
8	chr6:37167800-37169800	Weak transcription	Fetal Intestine Large	intestine
9	chr6:37168000-37173800	Enhancers	HepG2	liver
10	chr6:37168600-37169600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr6:37168600-37171800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr6:37168800-37171400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:37169000-37171600	Enhancers	Primary T cells fromperipheralblood	blood
14	chr6:37169200-37171600	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr6:37169200-37172600	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr6:37169200-37174000	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr6:37169400-37170000	Enhancers	Fetal Thymus	thymus
18	chr6:37169400-37170400	Enhancers	Colonic Mucosa	Colon
19	chr6:37169400-37171800	Enhancers	K562	blood
20	chr6:37169400-37173200	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr6:37169400-37173400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:37169400-37173400	Enhancers	Duodenum Mucosa	Duodenum
23	chr6:37169400-37174200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr6:37169400-37174200	Enhancers	Primary T helper cells PMA-I stimulated	--

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