Variant report

Variant	rs2842624
Chromosome Location	chr6:37159572-37159573
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:37159019..37162838-chr6:37167718..37170821,3	K562	blood:
2	chr6:37139864..37146803-chr6:37158990..37163193,11	K562	blood:
3	chr6:37158855..37161477-chr6:37165530..37167195,2	K562	blood:
4	chr6:37151400..37157351-chr6:37157640..37163417,11	K562	blood:
5	chr6:37156818..37161104-chr6:37172850..37175996,3	K562	blood:
6	chr6:37140835..37143675-chr6:37158995..37161367,4	K562	blood:
7	chr6:36995255..36997450-chr6:37157746..37159592,2	K562	blood:
8	chr6:36971710..36973758-chr6:37159189..37161224,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000137193	Chromatin interaction
ENSG00000252687	Chromatin interaction
ENSG00000146192	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10807180	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10947663	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11752000	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1757004	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1766696	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1766697	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1766698	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2265486	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2482013	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2482014	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2622887	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2622888	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2622889	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2776790	0.85[AMR][1000 genomes]
rs2776791	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2776792	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2776794	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2788070	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2788071	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2788072	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2788073	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2788074	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2842625	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2842626	0.87[AMR][1000 genomes]
rs2842627	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2842628	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2842629	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2842630	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2842631	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2842632	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2842633	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs900002	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9349030	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9368987	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9368990	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9380651	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9394421	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9394424	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9394425	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37141000-37165000	Weak transcription	Right Atrium	heart
2	chr6:37142600-37159600	Weak transcription	Fetal Heart	heart
3	chr6:37143400-37159600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:37145600-37162800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:37145800-37159600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:37147800-37160800	Enhancers	Primary hematopoietic stem cells	blood
7	chr6:37153800-37162800	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr6:37154600-37160800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:37155400-37160200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr6:37155600-37159800	Weak transcription	Adipose Nuclei	Adipose
11	chr6:37155600-37162800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:37156400-37162400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:37156600-37160800	Enhancers	Dnd41	blood
14	chr6:37157200-37159600	Enhancers	K562	blood
15	chr6:37157200-37160800	Enhancers	Fetal Thymus	thymus
16	chr6:37157400-37161200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr6:37157600-37159800	Weak transcription	HepG2	liver
18	chr6:37158200-37159600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr6:37158200-37159600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr6:37158200-37169800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr6:37158400-37159600	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr6:37158400-37159600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr6:37158400-37159800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr6:37158400-37160000	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr6:37158400-37161400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr6:37158600-37159600	Weak transcription	Primary T cells from cord blood	blood
27	chr6:37158600-37159600	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr6:37158800-37161600	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr6:37159400-37160200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
30	chr6:37159400-37160400	Enhancers	Primary T cells fromperipheralblood	blood

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