Variant report

Variant	rs2776790
Chromosome Location	chr6:37157747-37157748
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37151400..37157351-chr6:37157640..37163417,11	K562	blood:
2	chr6:37156818..37161104-chr6:37172850..37175996,3	K562	blood:
3	chr6:37140234..37143772-chr6:37155983..37158156,3	K562	blood:
4	chr6:36995255..36997450-chr6:37157746..37159592,2	K562	blood:
5	chr6:36952736..36955478-chr6:37155947..37158909,2	K562	blood:
6	chr6:37155352..37158318-chr6:37172850..37175746,2	K562	blood:

Variant related genes	Relation type
ENSG00000252687	Chromatin interaction
ENSG00000137409	Chromatin interaction
ENSG00000137193	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10807180	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10947663	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11752000	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1766696	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1766697	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1766698	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2265486	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2622887	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2622888	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2622889	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2776791	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2776792	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2776794	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2788070	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2788071	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2788072	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2788073	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2788074	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2842624	0.85[AMR][1000 genomes]
rs2842625	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2842626	0.83[AMR][1000 genomes]
rs2842627	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2842628	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2842629	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2842630	0.83[AMR][1000 genomes]
rs2842631	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2842632	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs900002	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9349030	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9368987	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9368990	0.80[AMR][1000 genomes]
rs9380651	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9394421	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9394425	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37141000-37165000	Weak transcription	Right Atrium	heart
2	chr6:37142600-37159600	Weak transcription	Fetal Heart	heart
3	chr6:37143400-37159600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:37145600-37162800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:37145800-37159600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:37147800-37160800	Enhancers	Primary hematopoietic stem cells	blood
7	chr6:37150000-37158800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr6:37151000-37158200	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr6:37151000-37158400	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr6:37151000-37158400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:37151400-37158400	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr6:37153800-37162800	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr6:37154600-37158400	Enhancers	Primary T cells fromperipheralblood	blood
14	chr6:37154600-37160800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr6:37155200-37158200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr6:37155200-37158400	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr6:37155400-37157800	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr6:37155400-37158000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr6:37155400-37160200	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr6:37155600-37158400	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr6:37155600-37159800	Weak transcription	Adipose Nuclei	Adipose
22	chr6:37155600-37162800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:37156000-37158200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr6:37156400-37162400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr6:37156600-37158600	Enhancers	Primary T cells from cord blood	blood
26	chr6:37156600-37160800	Enhancers	Dnd41	blood
27	chr6:37156800-37158000	Enhancers	Primary B cells from cord blood	blood
28	chr6:37156800-37158400	Enhancers	Placenta	Placenta
29	chr6:37157200-37158000	Enhancers	Primary B cells from peripheral blood	blood
30	chr6:37157200-37158400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:37157200-37159600	Enhancers	K562	blood
32	chr6:37157200-37160800	Enhancers	Fetal Thymus	thymus
33	chr6:37157400-37158400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
34	chr6:37157400-37161200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr6:37157600-37158000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr6:37157600-37158200	Enhancers	GM12878-XiMat	blood
37	chr6:37157600-37159800	Weak transcription	HepG2	liver

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