Variant report

Variant	rs2788075
Chromosome Location	chr6:37169909-37169910
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36993719..36995482-chr6:37168035..37170817,2	K562	blood:
2	chr6:37137974..37142365-chr6:37169170..37171597,4	K562	blood:
3	chr6:37159957..37163284-chr6:37166694..37170488,3	K562	blood:
4	chr6:37169595..37171540-chr6:37173349..37175303,2	K562	blood:
5	chr6:37159019..37162838-chr6:37167718..37170821,3	K562	blood:

Variant related genes	Relation type
ENSG00000137193	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10807180	0.81[EUR][1000 genomes]
rs10947663	0.81[EUR][1000 genomes]
rs11752000	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs1757007	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1766696	0.81[EUR][1000 genomes]
rs1766697	0.81[EUR][1000 genomes]
rs1766698	0.83[EUR][1000 genomes]
rs2265486	0.81[EUR][1000 genomes]
rs2622887	0.81[EUR][1000 genomes]
rs2622888	0.81[EUR][1000 genomes]
rs2622889	0.89[CEU][hapmap];0.81[GIH][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes]
rs2776791	0.82[EUR][1000 genomes]
rs2776792	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs2776794	0.81[EUR][1000 genomes]
rs2788070	0.81[EUR][1000 genomes]
rs2788071	0.81[EUR][1000 genomes]
rs2788073	0.81[EUR][1000 genomes]
rs2788074	0.80[EUR][1000 genomes]
rs2842625	0.89[CEU][hapmap];0.81[GIH][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes]
rs2842627	0.81[EUR][1000 genomes]
rs2842628	0.81[EUR][1000 genomes]
rs2842632	0.81[EUR][1000 genomes]
rs900002	0.89[CEU][hapmap];0.81[GIH][hapmap];0.88[TSI][hapmap];0.82[EUR][1000 genomes]
rs9349030	0.81[EUR][1000 genomes]
rs9368987	0.82[EUR][1000 genomes]
rs9394425	0.80[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2788075	FKBP5	cis	cerebellum	SCAN
rs2788075	ITPR3	cis	cerebellum	SCAN

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37167200-37179200	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr6:37167400-37173400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:37167600-37173600	Enhancers	Fetal Intestine Small	intestine
4	chr6:37168000-37173800	Enhancers	HepG2	liver
5	chr6:37168600-37171800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr6:37168800-37171400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:37169000-37171600	Enhancers	Primary T cells fromperipheralblood	blood
8	chr6:37169200-37171600	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr6:37169200-37172600	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr6:37169200-37174000	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr6:37169400-37170000	Enhancers	Fetal Thymus	thymus
12	chr6:37169400-37170400	Enhancers	Colonic Mucosa	Colon
13	chr6:37169400-37171800	Enhancers	K562	blood
14	chr6:37169400-37173200	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr6:37169400-37173400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:37169400-37173400	Enhancers	Duodenum Mucosa	Duodenum
17	chr6:37169400-37174200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr6:37169400-37174200	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr6:37169600-37170000	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr6:37169600-37170000	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr6:37169600-37170600	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr6:37169600-37171000	Enhancers	Rectal Mucosa Donor 29	rectum
23	chr6:37169600-37171200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr6:37169600-37171400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr6:37169600-37171600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr6:37169600-37171800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr6:37169600-37172200	Enhancers	Primary T cells from cord blood	blood
28	chr6:37169600-37176200	Enhancers	Primary hematopoietic stem cells	blood
29	chr6:37169800-37170000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr6:37169800-37170200	Weak transcription	Dnd41	blood
31	chr6:37169800-37171000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr6:37169800-37173800	Enhancers	Fetal Intestine Large	intestine

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