Variant report

Variant	rs16890031
Chromosome Location	chr8:87159029-87159030
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:87158000..87159505-chr8:87212329..87214750,2	MCF-7	breast:
2	chr8:87148080..87151991-chr8:87158630..87162519,5	MCF-7	breast:
3	chr8:87153824..87155791-chr8:87158636..87161687,3	MCF-7	breast:
4	chr8:87153151..87158884-chr8:87159008..87162555,5	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11997246	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16884100	1.00[AMR][1000 genomes]
rs16886289	1.00[AMR][1000 genomes]
rs16889524	1.00[AMR][1000 genomes]
rs16889910	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16890164	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16890198	1.00[AMR][1000 genomes]
rs16890863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16891478	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56315724	1.00[AMR][1000 genomes]
rs61197027	1.00[AMR][1000 genomes]
rs73688568	1.00[AMR][1000 genomes]
rs73688574	1.00[AMR][1000 genomes]
rs73688586	1.00[AMR][1000 genomes]
rs73688587	1.00[AMR][1000 genomes]
rs73691704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73691707	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73691709	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73691713	1.00[AMR][1000 genomes]
rs73691738	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428204	chr8:86405478-87312208	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	nsv529563	chr8:86467090-87381984	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
3	nsv932023	chr8:86845979-87490694	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv891147	chr8:86886950-87333968	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv891149	chr8:87023306-87167184	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1034855	chr8:87040075-87168730	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	esv2761443	chr8:87109368-87170814	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv1020115	chr8:87111707-87167790	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv1026646	chr8:87111707-87177368	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv611674	chr8:87156172-87315920	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87156600-87162400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:87158000-87160600	Enhancers	Stomach Mucosa	stomach
3	chr8:87158200-87160400	Enhancers	Pancreas	Pancrea
4	chr8:87158400-87161200	Enhancers	Fetal Intestine Large	intestine
5	chr8:87158600-87161200	Enhancers	Fetal Intestine Small	intestine
6	chr8:87158800-87159200	Enhancers	Liver	Liver
7	chr8:87158800-87159400	Enhancers	Rectal Mucosa Donor 29	rectum
8	chr8:87158800-87159400	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr8:87158800-87160400	Enhancers	Gastric	stomach
10	chr8:87159000-87163000	Enhancers	Fetal Lung	lung

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