Variant report

Variant	rs16890863
Chromosome Location	chr8:87165966-87165967
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:87165113..87167523-chr8:87354412..87356761,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000123124	Chromatin interaction
ENSG00000254231	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11997246	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16884100	1.00[AMR][1000 genomes]
rs16886289	1.00[AMR][1000 genomes]
rs16889524	1.00[AMR][1000 genomes]
rs16889910	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16890031	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16890164	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16890198	1.00[AMR][1000 genomes]
rs16891478	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56315724	1.00[AMR][1000 genomes]
rs61197027	1.00[AMR][1000 genomes]
rs73688568	1.00[AMR][1000 genomes]
rs73688574	1.00[AMR][1000 genomes]
rs73688586	1.00[AMR][1000 genomes]
rs73688587	1.00[AMR][1000 genomes]
rs73691704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73691707	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73691709	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73691713	1.00[AMR][1000 genomes]
rs73691738	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428204	chr8:86405478-87312208	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	nsv529563	chr8:86467090-87381984	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
3	nsv932023	chr8:86845979-87490694	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv891147	chr8:86886950-87333968	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv891149	chr8:87023306-87167184	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1034855	chr8:87040075-87168730	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	esv2761443	chr8:87109368-87170814	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv1020115	chr8:87111707-87167790	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv1026646	chr8:87111707-87177368	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv611674	chr8:87156172-87315920	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
11	nsv1027648	chr8:87161437-87319476	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv429926	chr8:87161695-87429872	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87164800-87166000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr8:87165000-87166000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:87165000-87166000	Enhancers	NHEK	skin
4	chr8:87165000-87166200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr8:87165000-87168600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr8:87165400-87166000	Enhancers	HMEC	breast
7	chr8:87165600-87166000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr8:87165600-87166000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr8:87165800-87166200	Enhancers	H1 Cell Line	embryonic stem cell

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