Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:38781958..38783786-chr6:38788204..38790134,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GLP1R-1	chr6:38789805-38790052	NONHSAT112332

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs16891022	0.92[JPT][hapmap]
rs16891058	0.84[JPT][hapmap]
rs16891124	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16891126	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs16891127	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16891131	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs16891132	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16891134	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16891137	0.97[ASN][1000 genomes]
rs16891162	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16891184	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16891196	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16891199	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16891231	0.93[CHB][hapmap];0.84[JPT][hapmap]
rs16891233	0.93[CHB][hapmap];0.84[JPT][hapmap]
rs2050180	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs2206604	0.93[CHB][hapmap];0.84[JPT][hapmap]
rs3918449	0.93[CHB][hapmap];0.84[JPT][hapmap]
rs57298929	1.00[AMR][1000 genomes]
rs57977635	0.97[ASN][1000 genomes]
rs61758417	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs742727	0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv830642	chr6:38645056-38800657	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv830643	chr6:38726675-38905589	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv470814	chr6:38728142-38790149	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38766800-38824400	Weak transcription	K562	blood

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