Variant report

Variant	rs16891196
Chromosome Location	chr6:38857299-38857300
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:38851556..38854549-chr6:38855510..38859290,4	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs16891022	0.86[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap]
rs16891058	0.83[JPT][hapmap]
rs16891092	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16891124	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16891126	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16891127	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16891131	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16891132	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16891134	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16891137	0.81[ASN][1000 genomes]
rs16891162	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16891184	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16891199	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16891231	0.92[CHB][hapmap];0.83[JPT][hapmap]
rs16891233	0.92[CHB][hapmap];0.83[JPT][hapmap]
rs16891250	1.00[AMR][1000 genomes]
rs16891268	0.83[CHD][hapmap];1.00[AMR][1000 genomes]
rs16891274	1.00[AMR][1000 genomes]
rs2050180	0.83[CHB][hapmap];0.91[CHD][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs2206604	0.92[CHB][hapmap];0.83[JPT][hapmap]
rs3918449	0.92[CHB][hapmap];0.83[JPT][hapmap]
rs57351843	1.00[AMR][1000 genomes]
rs57977635	0.81[ASN][1000 genomes]
rs61758417	0.82[ASN][1000 genomes]
rs742727	0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv830643	chr6:38726675-38905589	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1028088	chr6:38821047-39163549	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv538205	chr6:38821047-39163549	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv885821	chr6:38843970-39039503	Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16891196	C6orf64	cis	lymphoblastoid	seeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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